PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_019150556.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 344aa MW: 38632.1 Da PI: 6.6668 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.9 | 2e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++ ++ +G g+W+t+++ g+ R++k+c++rw +yl XP_019150556.1 13 RGLWSPEEDEKLIKHITTFGHGCWSTVPKLAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.7 | 8.6e-16 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+ ++d+++ G++ W+ Ia++++ gRt++++k++w++ XP_019150556.1 66 RGSFTEQEERTIIDVHRIIGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 89********************.*********.***********96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 344 aa Download sequence |
MGHRCCSKQR VKRGLWSPEE DEKLIKHITT FGHGCWSTVP KLAGLQRCGK SCRLRWINYL 60 RPDLRRGSFT EQEERTIIDV HRIIGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL 120 DPNTHNLISP TQAKTTKQNN SHSHTHNHRR HQNSPPSAFT IETSSSSHRD VVPMEIKATL 180 AAAFPPFPTP PNEKLLYHKN TIPLSHERNN NPVMDYGSCS SMEITSSSSN LSGLGILNSD 240 NCMWGGATNL ELLFGGSAEG RQEEGEEDQE EHIQEEMGAG TETQTGGNQV FKVNTDDEFN 300 NNGQSIEINL FDNSNIGIDF VESSLMPCAM YCNANSMDQL PWDC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12720.1 | 5e-81 | MYB family protein |