PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019150142.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C3H | ||||||||
Protein Properties | Length: 250aa MW: 28311.2 Da PI: 7.1867 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.3 | 5.5e-08 | 40 | 62 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +e Cr+f+r G+C G+ C++aH+ XP_019150142.1 40 QEACRRFSR-GQCAKGELCRYAHV 62 689******.*************6 PP | |||||||
2 | zf-CCCH | 20.8 | 6.9e-07 | 89 | 108 | 6 | 25 |
-SGGGGTS.--TTTTT-SS-S CS zf-CCCH 6 CrffartG.tCkyGdrCkFaH 25 C+ff+ G C+yG++C+F H XP_019150142.1 89 CQFFLG-GlPCPYGSKCRFLH 108 776666.55************ PP | |||||||
3 | zf-CCCH | 30.3 | 7.2e-10 | 155 | 179 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+lC + ++G C+yG++C++aHg XP_019150142.1 155 KTKLCLMWEKMGSCWYGSTCTYAHG 179 89**********************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence |
MGDYPDDDDE SRSRQKSRSS EMHHRLPVHT SDGGMRFDAQ EACRRFSRGQ CAKGELCRYA 60 HVIGNVRGTE GERGHWAMSQ RRTERVNFCQ FFLGGLPCPY GSKCRFLHEA SGNQGDSSMC 120 SEFRESSAIC IATNNDERRS KRLNVRQNPN PVWAKTKLCL MWEKMGSCWY GSTCTYAHGN 180 AELRNIDYPN PLDSSRGHDV DTASKNTESG TVQHGKQFLF KWTDVRKVSQ VYADWIDDDD 240 DASGKDGDGN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 5e-18 | C3H family protein |