PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019150142.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 250aa    MW: 28311.2 Da    PI: 7.1867
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019150142.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.5e-084062326
                    S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                    +e Cr+f+r G+C  G+ C++aH+
  XP_019150142.1 40 QEACRRFSR-GQCAKGELCRYAHV 62
                    689******.*************6 PP

2zf-CCCH20.86.9e-0789108625
                     -SGGGGTS.--TTTTT-SS-S CS
         zf-CCCH   6 CrffartG.tCkyGdrCkFaH 25 
                     C+ff+  G  C+yG++C+F H
  XP_019150142.1  89 CQFFLG-GlPCPYGSKCRFLH 108
                     776666.55************ PP

3zf-CCCH30.37.2e-10155179226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     kt+lC  + ++G C+yG++C++aHg
  XP_019150142.1 155 KTKLCLMWEKMGSCWYGSTCTYAHG 179
                     89**********************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MGDYPDDDDE SRSRQKSRSS EMHHRLPVHT SDGGMRFDAQ EACRRFSRGQ CAKGELCRYA  60
HVIGNVRGTE GERGHWAMSQ RRTERVNFCQ FFLGGLPCPY GSKCRFLHEA SGNQGDSSMC  120
SEFRESSAIC IATNNDERRS KRLNVRQNPN PVWAKTKLCL MWEKMGSCWY GSTCTYAHGN  180
AELRNIDYPN PLDSSRGHDV DTASKNTESG TVQHGKQFLF KWTDVRKVSQ VYADWIDDDD  240
DASGKDGDGN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.15e-18C3H family protein