PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019149665.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 652aa    MW: 70720.6 Da    PI: 5.4519
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019149665.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS330.72.8e-1012866523374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +++ e+A+a+++g++e a+++L+rl + a+ +g++ qRl+ay+t AL++r++     +    p se    +++e+ ++++ ++e+sP++k+++++
  XP_019149665.1 286 QAISEAATAIAEGKNEVASEILTRLAQVANVKGTAEQRLTAYMTSALRSRVSP----VEYPPPLSE---LHTKEHEFSTQKLYEASPCFKLGFMA 373
                     67889***********************************************9....333333333...458888899999************** PP

            GRAS  98 aNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     aN aIl+av+++   ++H+iDfdi++G+Q++ Ll aLa+R+ e+p  l+iT++++  +g  ++l++++  L+k A++ gv +++n+l ++++e l
  XP_019149665.1 374 ANLAILDAVSEQrfCKLHVIDFDIGEGGQYLHLLYALAARKaENPTVLKITTFAD-VPGGDQQLRAVEVELQKQAQTAGVCLSINILPCSNIE-L 466
                     ***********966678***********************9566669********.8889**************************9777776.6 PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     + e+L+v+++Eal+Vn++++l++l+desv++e++rde+L+ vk lsP+vv+vveqe++ n+++F++r+ ea+ yy alfdsl+a+++re+  r+ 
  XP_019149665.1 467 SRERLSVDSDEALVVNFAFNLYKLPDESVTTENRRDELLRRVKALSPTVVTVVEQELNGNTAPFVARVNEACGYYGALFDSLDATVSRENIFRVG 561
                     79********************************************************************************************* PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +E+  lgr+  n vaceg++r+er+e l+kWr+rl++aGF+++p+s+++ ++ ++ l+     + g+++ e+ g + +gW++r+L ++SaWr
  XP_019149665.1 562 IEEG-LGRKMGNSVACEGRDRVERCEVLGKWRARLSMAGFTAMPMSQQIPDSLRSKLNSGTrgNPGFTITEQAGGIGFGWMGRTLAVASAWR 652
                     ****.************************************************9999876556899*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    
MSSGFPGSVQ EFYGGPDGIS NGRSVPVGNN IGNLMQGGVQ VPYGSQLPGI VSDPASQIAH  60
RRSDLIGKRS LVEFQQQQQQ LQFLQQQRQG ALGLYLRNVK PRTYQHSSPI SPLSPVDLSA  120
LSSISSNSNS PAMNARYGVP ILQQFRPQLS MPAGSVNING VSVLPSGSGN PNYASGFSFP  180
NSVQNRAGLE TEKKMMNRLQ ELEKQLLDDI DEEEEGDTVS AVTNSEWSET IQSLISPAQT  240
PTQTQTQGPT EYQNQNNKPQ ISPSPTSSTS SCASSMECPA ITCPKQAISE AATAIAEGKN  300
EVASEILTRL AQVANVKGTA EQRLTAYMTS ALRSRVSPVE YPPPLSELHT KEHEFSTQKL  360
YEASPCFKLG FMAANLAILD AVSEQRFCKL HVIDFDIGEG GQYLHLLYAL AARKAENPTV  420
LKITTFADVP GGDQQLRAVE VELQKQAQTA GVCLSINILP CSNIELSRER LSVDSDEALV  480
VNFAFNLYKL PDESVTTENR RDELLRRVKA LSPTVVTVVE QELNGNTAPF VARVNEACGY  540
YGALFDSLDA TVSRENIFRV GIEEGLGRKM GNSVACEGRD RVERCEVLGK WRARLSMAGF  600
TAMPMSQQIP DSLRSKLNSG TRGNPGFTIT EQAGGIGFGW MGRTLAVASA WR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-140GRAS family protein