PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021300841.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

CO-like

Protein Properties

Length: 414aa MW: 44925.9 Da PI: 4.7613

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021300841.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.2	5.3e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C+++ +lC +C + H+ H++ XP_021300841.1 4 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44 7*****************************65677777765 PP
2	zf-B_box	20.3	1.2e-06	46	89	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C++++++++ C + + lC++C +H+ H++++ XP_021300841.1 46 LLCERCNSQPAFVRCAEERISLCQNCDWMGHSTstsnstHKRQT 89 57*****************************6688888898776 PP
3	CCT	62.9	9.7e-22	357	400	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a++RYkeK+ktRkFeK++rY+sRKa+A+ R+RvKGrFvk+ XP_021300841.1 357 RSDAVMRYKEKKKTRKFEKRVRYASRKARADVRKRVKGRFVKAG 400 889**************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLLCER CNSQPAFVRC 60 AEERISLCQN CDWMGHSTST SNSTHKRQTI NCYSGCPSAA ELSSIWSFVL ESPSAGESAC 120 EQKLGLMSIT GNTEKTSWGL TENNISQNGT GVAEVNDDLD ADKGSSWGGS SSVPELRSAP 180 QLLDQPAGST DLLPKLCCPQ TKCPGLCEDD LYDDFNMDEV DLNLENYEEL FGVTLNHSEE 240 LFENGGIDSL FGTKDMSAAD SNCQDAVAAE GSSVGLVNAI QPACSNAASA DSMMSNKTDS 300 ILCFTARQAH SSLSFSGLTG DSSAGDYQDC GASSMLLMGE PPWCPPCTEN SFSSATRSDA 360 VMRYKEKKKT RKFEKRVRYA SRKARADVRK RVKGRFVKAG DAYDYDPLNQ TRSC

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLLCER CNSQPAFVRC  60
AEERISLCQN CDWMGHSTST SNSTHKRQTI NCYSGCPSAA ELSSIWSFVL ESPSAGESAC  120
EQKLGLMSIT GNTEKTSWGL TENNISQNGT GVAEVNDDLD ADKGSSWGGS SSVPELRSAP  180
QLLDQPAGST DLLPKLCCPQ TKCPGLCEDD LYDDFNMDEV DLNLENYEEL FGVTLNHSEE  240
LFENGGIDSL FGTKDMSAAD SNCQDAVAAE GSSVGLVNAI QPACSNAASA DSMMSNKTDS  300
ILCFTARQAH SSLSFSGLTG DSSAGDYQDC GASSMLLMGE PPWCPPCTEN SFSSATRSDA  360
VMRYKEKKKT RKFEKRVRYA SRKARADVRK RVKGRFVKAG DAYDYDPLNQ TRSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	1e-126	CO-like family protein