PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021300643.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HB-other

Protein Properties

Length: 1166aa MW: 131736 Da PI: 8.009

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021300643.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	35.9	1.3e-11	5	54	8	57
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++ ql++Le+++e+++yp++++ e A+ lgLt + Vk WF rR ++k+ XP_021300643.1 5 SSLQLQALESFYEEEKYPTQRDVEGYAAALGLTLKEVKGWFVERRRRDKR 54 678*********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1166 aa Download sequence
MKRKSSLQLQ ALESFYEEEK YPTQRDVEGY AAALGLTLKE VKGWFVERRR RDKRDYGIML 60 PIHSMKKLHA PNGRNVGGFS AGRKNPKGHG SLVHNRSNTG AALYSRHKSA FSTANQRKKK 120 MLLPQDLLST QYILKKVFRK DGPPLGVEFD SLPSQAFCHC KGSKNSHPAD QEYERGATRR 180 RTVSELTTID YQNNCNESAP VKKHGIGKGL MTVWRVVNPE GGDIPTGVDF PNKQIVAPPQ 240 TSSPVVRKPP ARSKRRQPLV SLMKQRSLEK KLQEKKRPSI KRREVKSNKN DNNRQLHKEK 300 CELALEGSTS NKSLDQLLML VDDEELELRE LQAGPNPLTC SDHLGTSGVL GCSLCKDLLA 360 KFPPSSVKMK LPFSMQPWDS SPDAVKKLFK VFHFLYTYSL TLDICSFTLD EFAQAFHDKD 420 SLLLGKIHVA LLQLLLSDVE SELSGGLLPR FSLSCKFLAL LHSVENQEFV VEFWKTSLNP 480 LTWTEILRQV LVAAGFGSKQ GLFRREALSK EMSLMARYGL RPGSLKGELF RILSERGNNG 540 LKVSDLAKSL PVTELNLTST TEELEELICS TLSSDITLFE KISSSAYRLR RNSVAKEGND 600 FHSDTEDSGS VDDDTDGSSA SSSSEDSDCD LGNYYQQKLK HKNYRKSKNN MMAVYTEIDE 660 SHPGEVWLLG LMEGEYSDLS IEEKLNALVA LIDLLRAGSS VRMENPSKVI AECVPNIPHY 720 GCGAKIKRTS SNQHNFPGPS WVYGGQKNGV QEAHTSSDSL PVDSSSILKF CEKEKCPGSR 780 KDAKETQTGV DIHTMQSIFL GSDRRYNRYW LFLGPCNAYD PGHRRIYYES SEDGHWEVID 840 TEEALRALLG VLDDRGKREA LLIESLEKRE ASLCQEMSTR HLYDAGVRRM PSESPELDLV 900 REDSSSPVSD VDNNLSLTIA MNESLTPFGA IVLEAGKKGE EQNRKWRRLQ EFDMWIWKCF 960 YLNLNAVKYS KRSYFDSLNR CESCHDLYWR DEKHCKICHT TFELDFDLEE RYAIHVATCR 1020 EKGDNNMFPK FKVLSSQLQS LKAAVHAIES VMPEGALVGA WTKSAHRLWV KRLRRTSSLS 1080 ELLQVVVDFV AAINENWLNQ CNTEQGDCAV IEEIIAFFPT IPQTSSAVAL WLVKLDEFIA 1140 PYLKKVHSEK ELENGNRCSE RRAPKE

Sequence ? help Back to Top

Protein Sequence Length: 1166 aa Download sequence

MKRKSSLQLQ ALESFYEEEK YPTQRDVEGY AAALGLTLKE VKGWFVERRR RDKRDYGIML  60
PIHSMKKLHA PNGRNVGGFS AGRKNPKGHG SLVHNRSNTG AALYSRHKSA FSTANQRKKK  120
MLLPQDLLST QYILKKVFRK DGPPLGVEFD SLPSQAFCHC KGSKNSHPAD QEYERGATRR  180
RTVSELTTID YQNNCNESAP VKKHGIGKGL MTVWRVVNPE GGDIPTGVDF PNKQIVAPPQ  240
TSSPVVRKPP ARSKRRQPLV SLMKQRSLEK KLQEKKRPSI KRREVKSNKN DNNRQLHKEK  300
CELALEGSTS NKSLDQLLML VDDEELELRE LQAGPNPLTC SDHLGTSGVL GCSLCKDLLA  360
KFPPSSVKMK LPFSMQPWDS SPDAVKKLFK VFHFLYTYSL TLDICSFTLD EFAQAFHDKD  420
SLLLGKIHVA LLQLLLSDVE SELSGGLLPR FSLSCKFLAL LHSVENQEFV VEFWKTSLNP  480
LTWTEILRQV LVAAGFGSKQ GLFRREALSK EMSLMARYGL RPGSLKGELF RILSERGNNG  540
LKVSDLAKSL PVTELNLTST TEELEELICS TLSSDITLFE KISSSAYRLR RNSVAKEGND  600
FHSDTEDSGS VDDDTDGSSA SSSSEDSDCD LGNYYQQKLK HKNYRKSKNN MMAVYTEIDE  660
SHPGEVWLLG LMEGEYSDLS IEEKLNALVA LIDLLRAGSS VRMENPSKVI AECVPNIPHY  720
GCGAKIKRTS SNQHNFPGPS WVYGGQKNGV QEAHTSSDSL PVDSSSILKF CEKEKCPGSR  780
KDAKETQTGV DIHTMQSIFL GSDRRYNRYW LFLGPCNAYD PGHRRIYYES SEDGHWEVID  840
TEEALRALLG VLDDRGKREA LLIESLEKRE ASLCQEMSTR HLYDAGVRRM PSESPELDLV  900
REDSSSPVSD VDNNLSLTIA MNESLTPFGA IVLEAGKKGE EQNRKWRRLQ EFDMWIWKCF  960
YLNLNAVKYS KRSYFDSLNR CESCHDLYWR DEKHCKICHT TFELDFDLEE RYAIHVATCR  1020
EKGDNNMFPK FKVLSSQLQS LKAAVHAIES VMPEGALVGA WTKSAHRLWV KRLRRTSSLS  1080
ELLQVVVDFV AAINENWLNQ CNTEQGDCAV IEEIIAFFPT IPQTSSAVAL WLVKLDEFIA  1140
PYLKKVHSEK ELENGNRCSE RRAPKE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	47	52	ERRRRD
2	48	53	RRRRDK
3	48	55	RRRRDKRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	HB-other family protein