PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021300581.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HB-PHD

Protein Properties

Length: 950aa MW: 104880 Da PI: 4.7264

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021300581.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37.1	5.4e-12	863	903	12	52
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 ++L + F++n+yp++++++ LAk+l++t +qV+ WF N R XP_021300581.1 863 KQRLYKSFKENQYPDRATKQSLAKELDMTFQQVSKWFDNAR 903 689************************************99 PP
2	PHD	39.4	1.4e-13	492	547	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ ++++++lCdg C++ fH++Cl+++l +e++p + wlC+ C++k XP_021300581.1 492 FCAKCGSkdLSANNDIILCDGaCDRGFHQYCLQPPLLKEDIPPDdeGWLCPGCDCK 547 699*977677****66***************99999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 950 aa Download sequence
MIKVEHMGVS PSQAKSTKGN HFCPEESTSE QAHEFGSEYL LTELSENKNQ CGYAATQNES 60 AENATGVSSS GLHERSPKYV AKNSSPEHSG LLPKGVMGRN HTDKSFYAQE TVSGKTHEYG 120 CEYMHSETSE EKHQPGSEIV QNELEEACTL VCDLPAKKLQ TFSEGLSENA ITESLGLLPE 180 DSSKHTNTDK LSCPQLVSSE PTVDFGSGNV CKELGESPEQ RQQLDSESLP NGIEESNIAA 240 SSNVSNQALQ LNPEDMGKSH CGGHLQSPPG GVTNVIQSSK SPLVEPLGLP QEFAKGNPST 300 QQSGLPCEDM AQNSCAEQHE TKPKNLLKNS GRSRAGKTSK TIKKKYMLRS LRSSDRVLRS 360 KLQEKPKATE SSNNLADVGS SEQQKRRKRR RRKAKREVAD EFSRIRTHLR YLLNRINYER 420 SLIAAYSTEG WKGLSLEKLK PEKELQRATS EILRRKLKIR DLFQHIDSLC AEGKLPESLF 480 DSEGQIDSED IFCAKCGSKD LSANNDIILC DGACDRGFHQ YCLQPPLLKE DIPPDDEGWL 540 CPGCDCKVDC IELVNESQGT SFSITDSWEK VFPEAAVAAA GQNQDPNFGL PSDDSDDNDY 600 NPDGSETDEK DHGDESSSEE SDFTSTSEEL EVPANVDRYL GLPSDDSEDD DYEPDGPNHD 660 DVVKPESSSS DFTSDSEDLD AMLEEDITSQ KDEGPMANSA PRDSKRQKPK LGEKESMNDE 720 LLSIMEPASE QDGSAISKKR SIERLDYKRL YDETYGNVPS SSSDDEDWSD TTAPRKRKKR 780 TAELASTPEN GNVSVSRTVS VSDGLKQNPE ETEQKPRRKT YQMSRFKDTD SSPAEIQGNT 840 YVSGSSGKKA GSSTYKRLGE AVKQRLYKSF KENQYPDRAT KQSLAKELDM TFQQVSKWFD 900 NARWGFNNSP SSHETIANNA SEKDISSTLP KKEATGSGNV RDGDNSGKTN

Sequence ? help Back to Top

Protein Sequence Length: 950 aa Download sequence

MIKVEHMGVS PSQAKSTKGN HFCPEESTSE QAHEFGSEYL LTELSENKNQ CGYAATQNES  60
AENATGVSSS GLHERSPKYV AKNSSPEHSG LLPKGVMGRN HTDKSFYAQE TVSGKTHEYG  120
CEYMHSETSE EKHQPGSEIV QNELEEACTL VCDLPAKKLQ TFSEGLSENA ITESLGLLPE  180
DSSKHTNTDK LSCPQLVSSE PTVDFGSGNV CKELGESPEQ RQQLDSESLP NGIEESNIAA  240
SSNVSNQALQ LNPEDMGKSH CGGHLQSPPG GVTNVIQSSK SPLVEPLGLP QEFAKGNPST  300
QQSGLPCEDM AQNSCAEQHE TKPKNLLKNS GRSRAGKTSK TIKKKYMLRS LRSSDRVLRS  360
KLQEKPKATE SSNNLADVGS SEQQKRRKRR RRKAKREVAD EFSRIRTHLR YLLNRINYER  420
SLIAAYSTEG WKGLSLEKLK PEKELQRATS EILRRKLKIR DLFQHIDSLC AEGKLPESLF  480
DSEGQIDSED IFCAKCGSKD LSANNDIILC DGACDRGFHQ YCLQPPLLKE DIPPDDEGWL  540
CPGCDCKVDC IELVNESQGT SFSITDSWEK VFPEAAVAAA GQNQDPNFGL PSDDSDDNDY  600
NPDGSETDEK DHGDESSSEE SDFTSTSEEL EVPANVDRYL GLPSDDSEDD DYEPDGPNHD  660
DVVKPESSSS DFTSDSEDLD AMLEEDITSQ KDEGPMANSA PRDSKRQKPK LGEKESMNDE  720
LLSIMEPASE QDGSAISKKR SIERLDYKRL YDETYGNVPS SSSDDEDWSD TTAPRKRKKR  780
TAELASTPEN GNVSVSRTVS VSDGLKQNPE ETEQKPRRKT YQMSRFKDTD SSPAEIQGNT  840
YVSGSSGKKA GSSTYKRLGE AVKQRLYKSF KENQYPDRAT KQSLAKELDM TFQQVSKWFD  900
NARWGFNNSP SSHETIANNA SEKDISSTLP KKEATGSGNV RDGDNSGKTN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	384	390	QKRRKRR
2	385	391	KRRKRRR
3	385	393	KRRKRRRRK
4	385	396	KRRKRRRRKAKR
5	386	392	KRRKRRR
6	387	393	KRRKRRR
7	387	391	RKRRR
8	388	396	KRRKRRRRK
9	388	393	KRRRRK
10	390	397	RRRKAKRE
11	774	780	PRKRKKR
12	775	779	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	8e-95	HB-PHD family protein