PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021300342.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family HSF
Protein Properties Length: 528aa    MW: 57816.2 Da    PI: 4.6403
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021300342.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.56.8e-36451362102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++++ ++sws ++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++
  XP_021300342.1  45 FLSKTYDMVDDPATDAIVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLRN 130
                     9********************999*****************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i r+k 
  XP_021300342.1 131 ISRRKP 136
                     ***985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    
MDGMSSSSNG QNDASTTGGG AQTAAQPQPT PQPVAVQSAN APPPFLSKTY DMVDDPATDA  60
IVSWSPTNNS FVVWNPPEFA RDLLPKYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF  120
LRGQKHLLRN ISRRKPVHGH GHQQTQQSHG QSSSVGACVE VGKFGLEEEV ERLKRDKNVL  180
MQELVRLRQQ QQATDNQLQT MVQRLQGMEQ RQQQMMSFLA KAVQSPGFLA QFVQQQNESN  240
RRISEANKKR RLKQDGIIDN EHSASSDGQI VKYQPMMTES KAMLRQFMKG DASPRMDSFN  300
NNNENFLIGD GLSSSSGMDG GNSSSRVSGV TLQEVPPTSG QSTFIPATSE ISGQCPSTAV  360
TEIQSSPSAT TSEKITTAQF PDVSALVGVQ KPPSISVSQT DIIMPELSQI PDMVPESIVD  420
IPTENYMGSE TGNGGFIDPA ALVVDGSVPI ELDDIGPDPD IDALLDNSTF WDDLLVHSPL  480
PDDIESPSMD GKNKGNEGQP IDNGWDKSQH MDKLTEQMGL LRSDNKGL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247254NKKRRLKQ
2248253KKRRLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-135HSF family protein