PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021300299.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 215aa MW: 24428.2 Da PI: 10.1927 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.9 | 9.4e-22 | 17 | 63 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i k qvtfskRr+g++KKA+EL++LC+++va+i+fs+ k+y + XP_021300299.1 17 IAKKNHLQVTFSKRRTGLFKKASELCTLCGVDVAMIVFSPGKKVYSF 63 6677888**************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence |
MTKNSNMGRQ RITMAKIAKK NHLQVTFSKR RTGLFKKASE LCTLCGVDVA MIVFSPGKKV 60 YSFGHPRVES IVDRFLTQNP PLRSSTAHQL VEAHRNASIH ELNIRLTQLL EQLEIENRRG 120 DALDNIRKAG LNLCWWQAPI DELGLNELER LRIALEELKK NVAKQAKKVL LESADHKRWQ 180 FLAVNGIGHA NPFENKDNGI CRIIDQAYGY GDGLF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-50 | M-type_MADS family protein |