PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021300171.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

FAR1

Protein Properties

Length: 894aa MW: 102619 Da PI: 7.7348

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021300171.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.4	3.2e-25	94	202	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvkkekdgkwe 77 +fY+eYAk vGF++ +++s++s+ +g++++++fvC+++g+++e+ +++ r +r+ ++t+Cka ++vk+++dg+w XP_021300171.1 94 SFYKEYAKFVGFTTIIKASRRSRISGKFIDAKFVCTRYGNERESGGVgtpepvpsadipttipvkKKRGRVNRSWSKTDCKAGMHVKRRQDGRWI 188 5**************************************99988899*********998888899******************** PP FAR1 78 vtkleleHnHelap 91 v ++ +eHnH+++p XP_021300171.1 189 VRSFIKEHNHDIFP 202 ********9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 894 aa Download sequence
MVPTGIDLEL PSGEYHKEDN RPNVNINMME GGDGRHDRGR VSGNDEGNSG RNVGVAVVDA 60 RPRAYTGGEI NLNSVKNLEP HDGMEFESKE EAFSFYKEYA KFVGFTTIIK ASRRSRISGK 120 FIDAKFVCTR YGNERESGGV GTPEPVPSAD IPTTIPVKKK RGRVNRSWSK TDCKAGMHVK 180 RRQDGRWIVR SFIKEHNHDI FPDQAYFSGG HRNLGLGNSN VHTLHGRTKK MYVSMSRQFG 240 GHKKLESHKS GDTNRLRSCQ LLGLEEGDVK ALLDHFLCMQ DENPNFFYAI DLNEEQRLRN 300 LFWVDAKGRL DYGYFYDVVF FDTTYIKNEY KLPFVPFIGM NHHFQFLLLG CALVADETKL 360 TYAWLMRAWL RAMGGRPPKV ILTDHDKALK EAIAEVFPDS RHCFCLWHIV SKIPEKLSYV 420 MGQHENFMTK FDECVFKSYT DEQFEKKWWE LVDGFNLRND IWFQSLYEDR QQWVPAYMRG 480 VFLAGISTMQ RSDSVSSLFD KYLQRKTMLK EFLDQYETLL REKSEEEAKA DFETWHKPPQ 540 FKSPSLFEKQ MSPLYTHAIF KKFQVEVLGG IACHPRKESE QGGTKTFKVQ DFEKNQDFIV 600 VWNEATSDLS CLCRGFEFNG FPCRHILIIL QLSGVQSIPS QHILKRWTKD AKSRQTTGEE 660 SDVLETRMQR YNDLCQRAFK LGDEGSLSQE SYNIVLNALE EALRKCESVN CSIRGVTELM 720 SPQTQGSRHF EELNQSNSTS KAVKRINASQ KRQGYPEGEI SNSGMPDSWQ QMGQSNIRVP 780 SLECSYESQE SIRGMEQLNS RTPAIDSYFG AQQLVQGVGQ LNSIAPPHDA HYITQQRMHG 840 MGQLHFRPQT IPICYDIQDD IQDMVLKDQH NVGVGPPQLH GMVSKQLHSK HVSR

Sequence ? help Back to Top

Protein Sequence Length: 894 aa Download sequence

MVPTGIDLEL PSGEYHKEDN RPNVNINMME GGDGRHDRGR VSGNDEGNSG RNVGVAVVDA  60
RPRAYTGGEI NLNSVKNLEP HDGMEFESKE EAFSFYKEYA KFVGFTTIIK ASRRSRISGK  120
FIDAKFVCTR YGNERESGGV GTPEPVPSAD IPTTIPVKKK RGRVNRSWSK TDCKAGMHVK  180
RRQDGRWIVR SFIKEHNHDI FPDQAYFSGG HRNLGLGNSN VHTLHGRTKK MYVSMSRQFG  240
GHKKLESHKS GDTNRLRSCQ LLGLEEGDVK ALLDHFLCMQ DENPNFFYAI DLNEEQRLRN  300
LFWVDAKGRL DYGYFYDVVF FDTTYIKNEY KLPFVPFIGM NHHFQFLLLG CALVADETKL  360
TYAWLMRAWL RAMGGRPPKV ILTDHDKALK EAIAEVFPDS RHCFCLWHIV SKIPEKLSYV  420
MGQHENFMTK FDECVFKSYT DEQFEKKWWE LVDGFNLRND IWFQSLYEDR QQWVPAYMRG  480
VFLAGISTMQ RSDSVSSLFD KYLQRKTMLK EFLDQYETLL REKSEEEAKA DFETWHKPPQ  540
FKSPSLFEKQ MSPLYTHAIF KKFQVEVLGG IACHPRKESE QGGTKTFKVQ DFEKNQDFIV  600
VWNEATSDLS CLCRGFEFNG FPCRHILIIL QLSGVQSIPS QHILKRWTKD AKSRQTTGEE  660
SDVLETRMQR YNDLCQRAFK LGDEGSLSQE SYNIVLNALE EALRKCESVN CSIRGVTELM  720
SPQTQGSRHF EELNQSNSTS KAVKRINASQ KRQGYPEGEI SNSGMPDSWQ QMGQSNIRVP  780
SLECSYESQE SIRGMEQLNS RTPAIDSYFG AQQLVQGVGQ LNSIAPPHDA HYITQQRMHG  840
MGQLHFRPQT IPICYDIQDD IQDMVLKDQH NVGVGPPQLH GMVSKQLHSK HVSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	0.0	FAR1 family protein