PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021300049.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Nin-like

Protein Properties

Length: 711aa MW: 77102 Da PI: 5.3524

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021300049.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.6	3e-29	305	355	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ XP_021300049.1 305 EKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 355 799**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 711 aa Download sequence
MQAVNLKSSD ILDPPSTQIC NENRQNALAK ILEILTVVCE TYKLPLAQTW VPCRHRSVLA 60 YGGGLKKSCT SFDGSCMGQV CMSTTDVAFY VVDAHMWGFR EACLEHHLQK GQGVAGRAFL 120 SRNSCFCADI TQFCKTEYPL VHYARMFRLT SCFAICLQSS YTGDDDYVLE FFLPPAIADS 180 NEQQTLLGSI LATMKQHFQS LKVASGAELE EDEGSIEIIE AFSDETLDSR LESIPIPPSV 240 KSPPVPNTSP NRGELQLDSS KQQLIVTFDP ATDGGNVVAS GSQNPVCLPQ NKDVKKSERK 300 RGKTEKSISL EVLQQYFAGS LKDAAKSLGV CPTTMKRICR QHGISRWPSR KINKVNRSLT 360 KLKHVIESVQ GADGAFGLTS IATSPLPVAV GSISWPTSLN GSNQQNSPNS KPSDAQGEKY 420 DLPTCRTPVS NGQALVEDQL LAGRTLSQEL FPQQNGPSPD LNKGANRSKT GSGSREESAG 480 TPTSHGSCQG SPAIESAATK DPLSSIQEQC FKARGSPELA FQPLGELNIP ATFSMPEALV 540 ATEPQEPFGG MLVEDAGSSK DLRNLCPSAA DVGIDERFPE SSWTPPPCTD LALKQAMAAF 600 TQTTPHVTAR QEVRSVTIKA TYREDIIRFR ISLSSGIVEL KEEVAKRLKL EVGTFDVKYL 660 DDDSEWVLIA CDADLQECLD VSRSSGRNII RLSVHDAMAN LGSSCESTGE L

Sequence ? help Back to Top

Protein Sequence Length: 711 aa Download sequence

MQAVNLKSSD ILDPPSTQIC NENRQNALAK ILEILTVVCE TYKLPLAQTW VPCRHRSVLA  60
YGGGLKKSCT SFDGSCMGQV CMSTTDVAFY VVDAHMWGFR EACLEHHLQK GQGVAGRAFL  120
SRNSCFCADI TQFCKTEYPL VHYARMFRLT SCFAICLQSS YTGDDDYVLE FFLPPAIADS  180
NEQQTLLGSI LATMKQHFQS LKVASGAELE EDEGSIEIIE AFSDETLDSR LESIPIPPSV  240
KSPPVPNTSP NRGELQLDSS KQQLIVTFDP ATDGGNVVAS GSQNPVCLPQ NKDVKKSERK  300
RGKTEKSISL EVLQQYFAGS LKDAAKSLGV CPTTMKRICR QHGISRWPSR KINKVNRSLT  360
KLKHVIESVQ GADGAFGLTS IATSPLPVAV GSISWPTSLN GSNQQNSPNS KPSDAQGEKY  420
DLPTCRTPVS NGQALVEDQL LAGRTLSQEL FPQQNGPSPD LNKGANRSKT GSGSREESAG  480
TPTSHGSCQG SPAIESAATK DPLSSIQEQC FKARGSPELA FQPLGELNIP ATFSMPEALV  540
ATEPQEPFGG MLVEDAGSSK DLRNLCPSAA DVGIDERFPE SSWTPPPCTD LALKQAMAAF  600
TQTTPHVTAR QEVRSVTIKA TYREDIIRFR ISLSSGIVEL KEEVAKRLKL EVGTFDVKYL  660
DDDSEWVLIA CDADLQECLD VSRSSGRNII RLSVHDAMAN LGSSCESTGE L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	Nin-like family protein