PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299830.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 293aa MW: 32964.4 Da PI: 6.3648

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299830.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	116	135	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C C+k+F+r n++ H+ XP_021299830.1 116 FSCAVCNKTFNRYNNMQMHM 135 89*****************9 PP
2	zf-C2H2	13.9	0.00016	201	223	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F + + ++H +++ XP_021299830.1 201 FGCRKCGKPFAVRGDWRTHEKNC 223 56*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence
MQSSSFTYNN ISFRESACYE ADDAEDEDSI ILSLGPPGQG QDISRYPLSY PASNKAPNCP 60 NPTSTDQSGV TVALHIGPPA IETSSSNSND IRSNKLVEGQ YWIPSPAQIL VGPTQFSCAV 120 CNKTFNRYNN MQMHMWGHGS QYRRGPESLR GTKPASSMLR LPCYCCAEGC KNNIEHPRSR 180 PLKDFRTLQT HYKRKHGAKP FGCRKCGKPF AVRGDWRTHE KNCGKLWFCI CGSDFKHKRS 240 LKDHVRAFGD GHAPHTVEYC EVEEEGEEEE DDDDNDNDED NEDGSHRPLF FSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13290.1	1e-123	C2H2 family protein