PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299606.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

WRKY

Protein Properties

Length: 529aa MW: 56928.6 Da PI: 8.034

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299606.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	109.5	1.6e-34	243	299	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgsefprsYY+Ct++gCpvkkkvers d++v+ei+Y+g+Hnh+ XP_021299606.1 243 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPGCPVKKKVERSL-DGQVTEIIYKGQHNHQ 299 8**************************************.*************8 PP
2	WRKY	107.4	7e-34	422	480	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++dpk+v++tYeg+Hnh+ XP_021299606.1 422 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHD 480 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence
MAESQEQQHQ PSKTVASQRP TITPPPRPFT EALFNGGSGM MGFSPGPMTL VSNFFSDTDE 60 FKSFSQLLAG AMASPAAAAA AQRPNFPPPP TAATTEEQGD VSGSGGGGDT GLRFRQNKPA 120 GLVIAQPPPM FTVLQGLSPA SLLESPGFSV FSPGAQGPFG MTHQQALAQV TAQAAQAQMQ 180 AEYSSAPAAS LAQVSSITAS TTTNQQIPTS LPDSSVTVKE PPRVSHSDPR SQPASFIVDK 240 PADDGYNWRK YGQKQVKGSE FPRSYYKCTH PGCPVKKKVE RSLDGQVTEI IYKGQHNHQP 300 PQSNKRAKDS GSLNGNPNNQ GNSESASQPQ GGNLNILKEG TSAYSMSKKD HESSQATAEH 360 LSGTSDSEEA GDNETVADEK DEDEPGPKRR STEYRVSEPA SSHRTVTEPR IIVQTTSEVD 420 LLDDGYRWRK YGQKVVKGNP YPRSYYKCTT PGCNVRKHVE RASTDPKAVI TTYEGKHNHD 480 VPAAKTSSHN TANSNASQVR TQTVTNRADF GNNSQQRVAH LRLKEEQIT

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence

MAESQEQQHQ PSKTVASQRP TITPPPRPFT EALFNGGSGM MGFSPGPMTL VSNFFSDTDE  60
FKSFSQLLAG AMASPAAAAA AQRPNFPPPP TAATTEEQGD VSGSGGGGDT GLRFRQNKPA  120
GLVIAQPPPM FTVLQGLSPA SLLESPGFSV FSPGAQGPFG MTHQQALAQV TAQAAQAQMQ  180
AEYSSAPAAS LAQVSSITAS TTTNQQIPTS LPDSSVTVKE PPRVSHSDPR SQPASFIVDK  240
PADDGYNWRK YGQKQVKGSE FPRSYYKCTH PGCPVKKKVE RSLDGQVTEI IYKGQHNHQP  300
PQSNKRAKDS GSLNGNPNNQ GNSESASQPQ GGNLNILKEG TSAYSMSKKD HESSQATAEH  360
LSGTSDSEEA GDNETVADEK DEDEPGPKRR STEYRVSEPA SSHRTVTEPR IIVQTTSEVD  420
LLDDGYRWRK YGQKVVKGNP YPRSYYKCTT PGCNVRKHVE RASTDPKAVI TTYEGKHNHD  480
VPAAKTSSHN TANSNASQVR TQTVTNRADF GNNSQQRVAH LRLKEEQIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03340.1	1e-157	WRKY family protein