PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299602.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

WRKY

Protein Properties

Length: 605aa MW: 65599.4 Da PI: 6.6751

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299602.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.9	2.7e-30	250	309	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt + +Cpv+k+v+r+aed +++++tYeg+Hnh+ XP_021299602.1 250 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVSpTCPVRKQVQRCAEDMSILITTYEGNHNHP 309 58************************999**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 605 aa Download sequence
MENNLEKSAL GNNVVVEEKG TKSSSSPGGE GDHVSVETNE GEHQREIKQE DDRSKPPSPS 60 KKDSTIIKEE DQLESAKAKM GEVKEENGRL KLLLSQVMKE YQSLHMRFCD ILQQEEEAKK 120 STERAPSYQG NEEPDLVSLS LGRSSGTESK KEEKKSSNLS TNGKEDEKPN GNEGLALGLE 180 CKFEPTGSTE KNPSPETNFG KQEEEEPTEI WPPSKILKTV RSGDEDAAEL MQLKKAARVS 240 VRARCDTPTM NDGCQWRKYG QKIAKGNPCP RAYYRCTVSP TCPVRKQVQR CAEDMSILIT 300 TYEGNHNHPL PLSATAMAST TSAAASMLQS QSSSSQPGLG TSVSAPNSTS SAANLHGLNF 360 NFSQNSRPYQ HYFPNSSIST TNSHPTITLD LTAPANSSYF TRLSNAPRYS STCLNFSSSP 420 SSSLEGAINN PQTSWNTGHL NFGSLSNHKN SFFGPLNNLG RQPAQEHLYQ SYMQMTSQTP 480 HQQPLSETIT AATKAITSNP SFRSALAAAL TSFVGNGGGV PILDKHSENE AKWGESLPLN 540 TAQHHAAVDN EVGCASSYLG KSSSMNSQQQ QQKQGSLLLF PTNSLPFPAS KSAPGPPADT 600 SNQIK

Sequence ? help Back to Top

Protein Sequence Length: 605 aa Download sequence

MENNLEKSAL GNNVVVEEKG TKSSSSPGGE GDHVSVETNE GEHQREIKQE DDRSKPPSPS  60
KKDSTIIKEE DQLESAKAKM GEVKEENGRL KLLLSQVMKE YQSLHMRFCD ILQQEEEAKK  120
STERAPSYQG NEEPDLVSLS LGRSSGTESK KEEKKSSNLS TNGKEDEKPN GNEGLALGLE  180
CKFEPTGSTE KNPSPETNFG KQEEEEPTEI WPPSKILKTV RSGDEDAAEL MQLKKAARVS  240
VRARCDTPTM NDGCQWRKYG QKIAKGNPCP RAYYRCTVSP TCPVRKQVQR CAEDMSILIT  300
TYEGNHNHPL PLSATAMAST TSAAASMLQS QSSSSQPGLG TSVSAPNSTS SAANLHGLNF  360
NFSQNSRPYQ HYFPNSSIST TNSHPTITLD LTAPANSSYF TRLSNAPRYS STCLNFSSSP  420
SSSLEGAINN PQTSWNTGHL NFGSLSNHKN SFFGPLNNLG RQPAQEHLYQ SYMQMTSQTP  480
HQQPLSETIT AATKAITSNP SFRSALAAAL TSFVGNGGGV PILDKHSENE AKWGESLPLN  540
TAQHHAAVDN EVGCASSYLG KSSSMNSQQQ QQKQGSLLLF PTNSLPFPAS KSAPGPPADT  600
SNQIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	2e-64	WRKY family protein