PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021299537.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 521aa    MW: 58609.3 Da    PI: 4.7365
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021299537.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS363.14.1e-1111445141374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsPil 91 
                     lv+lLl+cAeav  +d++la+++L+++   a+p gd++qR+  +f+ +L++rl+   +++ +  + ++ + +      +e++ a++l+++++P++
  XP_021299537.1 144 LVHLLLACAEAVGCRDTQLANSMLCQIWASATPWGDSLQRVSYCFATGLKSRLSL-LQNVNANGTITNCAMDLplitREEKMEAFQLLYQTTPYI 237
                     68***************************************************98.55555444444444333667799999************* PP

            GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vak. 184
                      f++++aN+aI +a++g++ +HiiD+++++ lQWp+L+++LasRpeg p+lRiTg+ s++  +  ele+  + L + A++lg+++ef+++     
  XP_021299537.1 238 AFGFMAANEAICQAAQGKDSLHIIDLGMEHTLQWPSLIRTLASRPEGLPTLRITGLTSNQ--DLLELEASMKSLVEDASSLGISLEFHMIpE-Pl 329
                     **********************************************************66..9**************************843.34 PP

            GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                     + + l+ e+L++++gEal +n++++lh+ ++es  + +   ++L+++++l P+++++veq+a+hn++ Fl rfle+l+yysa+fdslea+lpr+s
  XP_021299537.1 330 TPSLLTRENLNLREGEALFINSIMHLHKYVKESRGSLK---AILQAIRKLGPTLLTMVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASLPRHS 421
                     8899**************************88776666...9***************************************************** PP

            GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +r+k+Er  +++ei+n+va eg++r+erhe++ +Wr++l+++GF+ + l+    +qa+++l+ ++ dgy++ +e+g+l+lgWk+rp++ +SaW+
  XP_021299537.1 422 PQRMKIERLHFAEEIRNIVAYEGTDRIERHERADQWRRQLGRSGFQVIGLK--CLSQARMMLSVYGCDGYTLGSEKGCLLLGWKGRPVMLASAWQ 514
                     **********************************************99885..89***************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    
MEGINGWLSF PLYQSFNHDF AIRRFCRARV ELERGEWEEA MNEIESFSPD DETGTPHLAA  60
SEVDDFVDSF INMDVGDDED RDDRNSNKNQ DFHHFQDEIG AFSMVNEDLG DELEMSGSCE  120
DFGVHEMVPS VEEVSHGVDQ GLHLVHLLLA CAEAVGCRDT QLANSMLCQI WASATPWGDS  180
LQRVSYCFAT GLKSRLSLLQ NVNANGTITN CAMDLPLITR EEKMEAFQLL YQTTPYIAFG  240
FMAANEAICQ AAQGKDSLHI IDLGMEHTLQ WPSLIRTLAS RPEGLPTLRI TGLTSNQDLL  300
ELEASMKSLV EDASSLGISL EFHMIPEPLT PSLLTRENLN LREGEALFIN SIMHLHKYVK  360
ESRGSLKAIL QAIRKLGPTL LTMVEQDANH NGPFFLGRFL ESLHYYSAIF DSLEASLPRH  420
SPQRMKIERL HFAEEIRNIV AYEGTDRIER HERADQWRRQ LGRSGFQVIG LKCLSQARMM  480
LSVYGCDGYT LGSEKGCLLL GWKGRPVMLA SAWQLHNVSS S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.17e-80GRAS family protein