PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299530.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

NF-YC

Protein Properties

Length: 270aa MW: 30262.2 Da PI: 6.3421

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299530.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	177.3	1.5e-55	88	192	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q ie++t+fknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdfl XP_021299530.1 88 QLQMFWANQmqeIEQTTEFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFL 182 89****988889***************************************************************************** PP NF-YC 93 vdivprdelk 102 vdi+prdelk XP_021299530.1 183 VDIIPRDELK 192 *****975 PP

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence
MDQSEQTQQQ QHQQHQQQPV MGVVPGAGQM GYSTGPYQTA SMVASGTPAV AVPSPTQPPA 60 AFSSSPHQLA YQQAQHFHHQ QQQQQQQQLQ MFWANQMQEI EQTTEFKNHS LPLARIKKIM 120 KADEDVRMIS AEAPVIFAKA CEMFILELTL RSWIHTEENK RRTLQKNDIA AAISRTDVFD 180 FLVDIIPRDE LKEEGLGVTK ATIPLVGSPA DIPYYYVPQH PVGPSGMIMG KPVDQAALYP 240 GQQARPPMAF MPWPQGQPQH QQSQQQQSDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	161	167	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.1	1e-82	NF-YC family protein