PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021299492.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | C3H | ||||||||
Protein Properties | Length: 401aa MW: 43546.7 Da PI: 9.1072 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.2 | 4.2e-11 | 75 | 99 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f++t Ck+G++CkF+H++ XP_021299492.1 75 EPDCPYFLKTQRCKFGSKCKFNHPK 99 789********************96 PP | |||||||
2 | zf-CCCH | 32.2 | 1.8e-10 | 122 | 146 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C f+ +tG Ck+G++CkF+H++ XP_021299492.1 122 EPSCAFYVKTGKCKFGATCKFHHPK 146 577********************96 PP | |||||||
3 | zf-CCCH | 38.5 | 1.9e-12 | 193 | 216 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ XP_021299492.1 193 EVDCPFYLKTGSCKYGSSCRYNHP 216 579********************9 PP | |||||||
4 | zf-CCCH | 40.6 | 4.3e-13 | 284 | 308 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C ++++tG C++GdrCkF+H+ XP_021299492.1 284 GQTECEYYMKTGDCRFGDRCKFHHP 308 6789********************8 PP | |||||||
5 | zf-CCCH | 39.7 | 8.3e-13 | 340 | 361 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tGtCkyG++CkF H+p XP_021299492.1 340 CPYYMKTGTCKYGATCKFDHPP 361 ********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence |
MDTRLDTRAH HLRPLSPPRS SVIWTPRPRL IRICFTTSSP GLQVSTSLPP RRLSNAPPKV 60 PLATTGESLP ERAGEPDCPY FLKTQRCKFG SKCKFNHPKD KLAISGAFEN IQVAVLPERP 120 SEPSCAFYVK TGKCKFGATC KFHHPKDIQI ASSGQDNARG EQPEIVSKTG GATADVKPAL 180 FHNSKGLPIR LDEVDCPFYL KTGSCKYGSS CRYNHPDRNA FNPPAAVVGH SLVASASNLN 240 IGVVTPAASI YQTIDPRLGQ STLLAQPTFP TLGVAPTVYP QRPGQTECEY YMKTGDCRFG 300 DRCKFHHPID RSASKTKQTS QQAIKLTLAG LPRREGNVHC PYYMKTGTCK YGATCKFDHP 360 PPGEVMAIAA AQGPSTAVGG EEKGEMEEAE TVGTNIAMRS C |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-138 | C3H family protein |