PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021299267.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 654aa    MW: 72435.9 Da    PI: 5.799
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021299267.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS435.83.1e-1332886531374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaalklfsevsPilk 92 
                     lv+lLl+cAeav+++d  la++++ +l+  ++p gd+mqR+a++fteAL+arla    + +++++a +p    ++ns e+l+++++ ++++P++k
  XP_021299267.1 288 LVHLLLACAEAVAQEDYLLARKYIHHLNRVVTPLGDSMQRVASCFTEALSARLAAtitTNPGTSSAPKPFVPFPSNSLEVLKIYQIVYQACPYIK 382
                     68***************************************************99543456788888888888899******************* PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     f+h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+    s e ++etg+ L+++A++l++pfef++ + ++le
  XP_021299267.1 383 FAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPNGAPFLRITGVGP----SLEYIKETGRCLTELAHSLHIPFEFHP-IGEQLE 472
                     *********************************************************....9**************************.7***** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     d+++++++ + gEalaVn v +lhr++  s +l +    +L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a+++++s +r
  XP_021299267.1 473 DIKPHMFNRRVGEALAVNAVNRLHRVP--SNCLGN----LLAMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFSPDSAQR 561
                     **************************9..666666....******************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +kvE+ ++++ei+n+vaceg+er++rhe+lekWr+ +e  GFk vpls +a++q k ll  ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  XP_021299267.1 562 AKVEQYIFAPEIRNIVACEGSERTARHERLEKWRKLMEGKGFKGVPLSANAVTQSKILLGLYSCDGYRLTEDKGCLLLGWQDRAILAASAWR 653
                     *******************************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    
MMNSLCGSMG SIKSENSCES IVESKKTFPS SDLEQKSLTP PSLNFPAVKF ELDDVEVQSP  60
DSSAWETFFS DYFDSDAMIS SPVRNLPSPQ ISSYSFGNVQ AMQGQSLPGC SPPRFSSQLG  120
SFNSTHKGKG QSPLHKVFNS PNNQFMQVES LSLPAIEEFL DDYQKDGYGE YPTTRISSMG  180
TSNNMFEMPS TAPAVLDCIT IPNSSRFCGS ASETSSSAGC SQLTHEQHYP VNSIARPPLS  240
QQLQQEKQLE KQQPAPPEQQ QQHQNLGHTL MVPIPIGPEQ EQDSGLQLVH LLLACAEAVA  300
QEDYLLARKY IHHLNRVVTP LGDSMQRVAS CFTEALSARL AATITTNPGT SSAPKPFVPF  360
PSNSLEVLKI YQIVYQACPY IKFAHFTANQ AIFEAFEAEE RVHVIDLDIL QGYQWPAFMQ  420
ALAARPNGAP FLRITGVGPS LEYIKETGRC LTELAHSLHI PFEFHPIGEQ LEDIKPHMFN  480
RRVGEALAVN AVNRLHRVPS NCLGNLLAMI RDQAPNIVTL VEQEASHNGP YFLGRFLEAL  540
HYYSAIFDSL DATFSPDSAQ RAKVEQYIFA PEIRNIVACE GSERTARHER LEKWRKLMEG  600
KGFKGVPLSA NAVTQSKILL GLYSCDGYRL TEDKGCLLLG WQDRAILAAS AWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-103GRAS family protein