PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299070.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

SBP

Protein Properties

Length: 359aa MW: 40320.5 Da PI: 8.6762

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299070.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.2	1.3e-39	75	151	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dl + +ey+rrh+vCe+hsk pvv+++g+eqrfCqqCsrfh+l efDeekrsCr+rL++hn+rrrk+++ XP_021299070.1 75 CSVDGCKSDLGKYREYYRRHRVCEHHSKDPVVIIRGEEQRFCQQCSRFHALGEFDEEKRSCRKRLDGHNRRRRKSRP 151 **************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MDLDSEDSAL GLSQVEDKGQ KNGGLSVDSK HGGLRNVRVK SLNKFKNSRG LQLESPPSWS 60 MKRPAMAKGN ARISCSVDGC KSDLGKYREY YRRHRVCEHH SKDPVVIIRG EEQRFCQQCS 120 RFHALGEFDE EKRSCRKRLD GHNRRRRKSR PESLFTSPES NLGSTILQFC DVTPATVHDS 180 YEQLYLVGRL RPPNPLACIK RVENREFAVL LTNDHERINQ VIPEVSDGRR FANVIASSEG 240 GRGRQKMQAN GIIRSIDSCC ALSLLSPLVP LHSNVIHSIA QNSSSHGGMG QPFSSTLIPE 300 RNQTLQWQHD PSSLAQSLAP ELQCSMPTWS GSPPTSDQFL PFHRLEISLY CDNNVLFEP

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MDLDSEDSAL GLSQVEDKGQ KNGGLSVDSK HGGLRNVRVK SLNKFKNSRG LQLESPPSWS  60
MKRPAMAKGN ARISCSVDGC KSDLGKYREY YRRHRVCEHH SKDPVVIIRG EEQRFCQQCS  120
RFHALGEFDE EKRSCRKRLD GHNRRRRKSR PESLFTSPES NLGSTILQFC DVTPATVHDS  180
YEQLYLVGRL RPPNPLACIK RVENREFAVL LTNDHERINQ VIPEVSDGRR FANVIASSEG  240
GRGRQKMQAN GIIRSIDSCC ALSLLSPLVP LHSNVIHSIA QNSSSHGGMG QPFSSTLIPE  300
RNQTLQWQHD PSSLAQSLAP ELQCSMPTWS GSPPTSDQFL PFHRLEISLY CDNNVLFEP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	1e-36	SBP family protein