PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021298983.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 249aa MW: 28887 Da PI: 8.0697 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 72.3 | 4e-23 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 kri+n rq+t+skRr+gilKKA ELS LCd++v +++fs+tg+l y+ XP_021298983.1 9 KRIDNPCSRQITYSKRREGILKKATELSALCDTDVGLLMFSPTGRLTSYA 58 79********************************************9997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence |
MGRKRLLMKR IDNPCSRQIT YSKRREGILK KATELSALCD TDVGLLMFSP TGRLTSYAHK 60 GRIEDIFLRY IDQPDDFKGP VDNEEFLYQS LKHLKYEGEM LDKIGSMEAL ERKLRDLNRQ 120 KYEVQDKLRS YNPDMTKILS IPEAHLHQQF VMDAIRRIEK LKKAKLLDKE ISPSKLNSVE 180 IPIIEVKDSD LTTEESVNSK RNRDQSADDQ KEETQLPTGP HLSISYLKTQ KNWNLQNAED 240 VTSSEGHMC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77980.1 | 4e-33 | MIKC_MADS family protein |