PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021298967.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

M-type_MADS

Protein Properties

Length: 279aa MW: 32202.9 Da PI: 8.1961

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021298967.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	72.1	4.8e-23	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 kri+n rq+t+skRr+gilKKA ELS LCd++v +++fs+tg+l y+ XP_021298967.1 9 KRIDNPCSRQITYSKRREGILKKATELSALCDTDVGLLMFSPTGRLTSYA 58 79********************************************9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence
MGRKRLLMKR IDNPCSRQIT YSKRREGILK KATELSALCD TDVGLLMFSP TGRLTSYAHK 60 GRIEDIFLRY IDQPDDFKGP VDNEEVGYLS LSSHLCPFLR LILSSYSAVS YLCLQFLYQS 120 LKHLKYEGEM LDKIGSMEAL ERKLRDLNRQ KYEVQDKLRS YNPDMTKILS IPEAHLHQQF 180 VMDAIRRIEK LKKAKLLDKE ISPSKLNSVE IPIIEVKDSD LTTEESVNSK RNRDQSADDQ 240 KEETQLPTGP HLSISYLKTQ KNWNLQNAED VTSSEGHMC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77980.1	8e-29	MIKC_MADS family protein