PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021298881.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family LBD
Protein Properties Length: 264aa    MW: 29092.4 Da    PI: 9.3229
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021298881.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.21.7e-3032135199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+ +C+++p++     p++q++++ +++k++G++ +l+l++a p++ r+++++sl+yeA+ r+ +PvyG+vg+++++++  +q+
  XP_021298881.1  32 SCNGCRVLRKGCSGNCIIRPCLqwiksPDSQANATLFLAKFYGRAGLLNLIEAGPQHLRPAIFRSLLYEACGRVVNPVYGSVGMLWSGNWAQCQA 126
                     6********************************************************************************************** PP

          DUF260  91 kaelallke 99 
                     +++++l ++
  XP_021298881.1 127 AVDAVLKGS 135
                     *99988766 PP

Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MPRRLSLSPS VPALSVSVSL CNWSHKFIMK MSCNGCRVLR KGCSGNCIIR PCLQWIKSPD  60
SQANATLFLA KFYGRAGLLN LIEAGPQHLR PAIFRSLLYE ACGRVVNPVY GSVGMLWSGN  120
WAQCQAAVDA VLKGSPITQT SSSDSLALQP ISPLKTYDIR HVSKEPRPAD IDKLKTRTRF  180
KRSVNRSKRQ VDPPSYDSWM SQRGNDDSKD DESMFSVETV EGSLVNQSQK VPALKFASQI  240
EESTDDVGLE LTLGLVPAAL QPHQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.14e-86LBD family protein