PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021298881.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | LBD | ||||||||
Protein Properties | Length: 264aa MW: 29092.4 Da PI: 9.3229 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 97.2 | 1.7e-30 | 32 | 135 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+ +C+++p++ p++q++++ +++k++G++ +l+l++a p++ r+++++sl+yeA+ r+ +PvyG+vg+++++++ +q+ XP_021298881.1 32 SCNGCRVLRKGCSGNCIIRPCLqwiksPDSQANATLFLAKFYGRAGLLNLIEAGPQHLRPAIFRSLLYEACGRVVNPVYGSVGMLWSGNWAQCQA 126 6********************************************************************************************** PP DUF260 91 kaelallke 99 +++++l ++ XP_021298881.1 127 AVDAVLKGS 135 *99988766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence |
MPRRLSLSPS VPALSVSVSL CNWSHKFIMK MSCNGCRVLR KGCSGNCIIR PCLQWIKSPD 60 SQANATLFLA KFYGRAGLLN LIEAGPQHLR PAIFRSLLYE ACGRVVNPVY GSVGMLWSGN 120 WAQCQAAVDA VLKGSPITQT SSSDSLALQP ISPLKTYDIR HVSKEPRPAD IDKLKTRTRF 180 KRSVNRSKRQ VDPPSYDSWM SQRGNDDSKD DESMFSVETV EGSLVNQSQK VPALKFASQI 240 EESTDDVGLE LTLGLVPAAL QPHQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 4e-86 | LBD family protein |