PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021298702.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

CPP

Protein Properties

Length: 639aa MW: 70985.8 Da PI: 5.0814

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021298702.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.2	2.2e-15	347	384	3	40
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k+CnC+ s+Clk+YCeCfaag +C ++C C++C+N++ XP_021298702.1 347 FKRCNCQMSRCLKLYCECFAAGLYCVDSCACQNCRNRT 384 699*********************************86 PP
2	TCR	47	4.9e-15	432	471	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gC+Ck+skClkkYCeC+ a++ Cs C+Ce+C N+ XP_021298702.1 432 RHKRGCKCKRSKCLKKYCECYRAKVGCSGGCRCEGCDNSF 471 589***********************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 639 aa Download sequence
MESPKSDGNA IEAFPASARK SPFSKLLNNL SRIDSANAAL YIERLSEYSL PTTPSVFGSP 60 HLDLQPETGF LESEEIAAST SNAHGQLYSP SSSALIPYIQ KQFQSSNPSE CVDDFLADPL 120 EFDSAQHAET FVQSANVVPL LLPSRFTPSK VTTKKVDYTN DWVVEVGAQT LPHLSKKHLL 180 SGSLILLEDS GDQSIDESFD KILKFSSENI CNYVEPDELL EHQEASQDQR GIRRHLQFEA 240 TLDCKDNAAF NCHTSSRVRE VREVVDHVES DHQSSEAVVV DNGGHLLDNN EPPWDTQQVP 300 CFDQQTLPCG QMQGQQIGQR VEVRSQYGES SKGKRNRETY THESGDFKRC NCQMSRCLKL 360 YCECFAAGLY CVDSCACQNC RNRTAYEDWV EESREQIELR NPLAFAPTIV QQANDSPILA 420 DDGNWTNPSS ARHKRGCKCK RSKCLKKYCE CYRAKVGCSG GCRCEGCDNS FGKKSESIFQ 480 REEEWKNLLN MEEVMSDQKG GTANQFSPTW EELGNTSHLT PLSHQVPSLT LSNIWYFPYI 540 SQAQPQDGSG LQLSPAQLHW YSSALASVNA PCEIMGDGSP HILNDNSNPA NKLQSGSPNK 600 ERVFPPQQIQ SDRLGSSSTT GLQSGRKLCL QAVSSFPPL

Sequence ? help Back to Top

Protein Sequence Length: 639 aa Download sequence

MESPKSDGNA IEAFPASARK SPFSKLLNNL SRIDSANAAL YIERLSEYSL PTTPSVFGSP  60
HLDLQPETGF LESEEIAAST SNAHGQLYSP SSSALIPYIQ KQFQSSNPSE CVDDFLADPL  120
EFDSAQHAET FVQSANVVPL LLPSRFTPSK VTTKKVDYTN DWVVEVGAQT LPHLSKKHLL  180
SGSLILLEDS GDQSIDESFD KILKFSSENI CNYVEPDELL EHQEASQDQR GIRRHLQFEA  240
TLDCKDNAAF NCHTSSRVRE VREVVDHVES DHQSSEAVVV DNGGHLLDNN EPPWDTQQVP  300
CFDQQTLPCG QMQGQQIGQR VEVRSQYGES SKGKRNRETY THESGDFKRC NCQMSRCLKL  360
YCECFAAGLY CVDSCACQNC RNRTAYEDWV EESREQIELR NPLAFAPTIV QQANDSPILA  420
DDGNWTNPSS ARHKRGCKCK RSKCLKKYCE CYRAKVGCSG GCRCEGCDNS FGKKSESIFQ  480
REEEWKNLLN MEEVMSDQKG GTANQFSPTW EELGNTSHLT PLSHQVPSLT LSNIWYFPYI  540
SQAQPQDGSG LQLSPAQLHW YSSALASVNA PCEIMGDGSP HILNDNSNPA NKLQSGSPNK  600
ERVFPPQQIQ SDRLGSSSTT GLQSGRKLCL QAVSSFPPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	9e-54	CPP family protein