PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021298556.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family SBP
Protein Properties Length: 486aa    MW: 53274.5 Da    PI: 8.0842
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021298556.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.71.3e-41188264278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     CqvegC+ dls+ak+yhr+h+vCe hsk+p+v+v gle+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+q+
  XP_021298556.1 188 CQVEGCNLDLSSAKDYHRKHRVCESHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKPQT 264
                     **************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    
MSSISLMEWN AKTSLQWDWE NLMMFNSTPT EIPRKLRPIE WDIDGEGGME SGSLYSSGAA  60
GGSGGSGSDL GLASLSKSSK SASINSSSMG EIKVTKFSLE ALEASPDDII NKKEVSKVEL  120
TGTSPTLEAS VGSGEPLLSL KLGKRTYFED VCAGSNAKNS SRSATPAPSP TTAKRSKPNC  180
QSTHVPHCQV EGCNLDLSSA KDYHRKHRVC ESHSKSPKVI VGGLERRFCQ QCSRFHGLSE  240
FDEKKRSCRR RLSDHNARRR KPQTEAVHFN AARLTSSSYD GKPQMGFVWN KVPFLHARPN  300
EGFTWEGTFD SKSSQMKGFT PTKVGNVNGQ LQLPGNQLLN SITMRCHDSS RFLPTKGKHN  360
TGEVLNQVLP NIAGVEEPTL TSNMGTTQDL HRALSLLSND SWISCEPKHG SLAYSIHANP  420
TSTSQPVMNV ISQGFPCALS ENWQMEQQTT ESQVQTTLHG DADNHFQEFQ LLKASYDGGF  480
YSNQMN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244261KKRSCRRRLSDHNARRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.11e-88SBP family protein