PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021298235.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

WRKY

Protein Properties

Length: 508aa MW: 54493.8 Da PI: 5.7683

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021298235.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	90.5	1.3e-28	238	296	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC++kk+ rs++dp++++itY++eHnh+ XP_021298235.1 238 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSAKKQSRRSRTDPNMLVITYTSEHNHP 296 699**********************998**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence
MCSVFGLQME NYQGDLNDIV RASGGPMGCG SGHGASDVPA SSWQQFPSAS DPLNFASSAM 60 EDDRVNTFGD PFSTLRDPLL HELNVAAAAG STYFSSPNST VDDTSNFSGA SNVVGHDKIF 120 EDDMRTSSPC SIFSRIQISP SSSKLAVSPC DSPPLMAAAG GVGVSVSPRG IKAPVVLPSD 180 MINANSSKGC LIDNSGPLQI SSPRNLGIKR RKSQAKKVVC IPAPAAANSR SSGEVVPSDL 240 WAWRKYGQKP IKGSPYPRGY YRCSSSKGCS AKKQSRRSRT DPNMLVITYT SEHNHPXPTQ 300 RNALAGSTRS QTSKNNASSS KSSPCSQPLS SLNPKEELKE SSNDALSPAV AASSTASASV 360 KEEVEDIEKQ LDIDDAELAK GXASNNRPAL PDSQAQSEDF FADLDEIEAD PLNLLFPQGF 420 TEEEQKENKA MDPFSLFDWS SGDNNASFXE AKKGVYSKTL NSKQQATKFH TQTYIETVSK 480 LGLVQMDARS LYKPFLKFSG LEICMWGE

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence

MCSVFGLQME NYQGDLNDIV RASGGPMGCG SGHGASDVPA SSWQQFPSAS DPLNFASSAM  60
EDDRVNTFGD PFSTLRDPLL HELNVAAAAG STYFSSPNST VDDTSNFSGA SNVVGHDKIF  120
EDDMRTSSPC SIFSRIQISP SSSKLAVSPC DSPPLMAAAG GVGVSVSPRG IKAPVVLPSD  180
MINANSSKGC LIDNSGPLQI SSPRNLGIKR RKSQAKKVVC IPAPAAANSR SSGEVVPSDL  240
WAWRKYGQKP IKGSPYPRGY YRCSSSKGCS AKKQSRRSRT DPNMLVITYT SEHNHPXPTQ  300
RNALAGSTRS QTSKNNASSS KSSPCSQPLS SLNPKEELKE SSNDALSPAV AASSTASASV  360
KEEVEDIEKQ LDIDDAELAK GXASNNRPAL PDSQAQSEDF FADLDEIEAD PLNLLFPQGF  420
TEEEQKENKA MDPFSLFDWS SGDNNASFXE AKKGVYSKTL NSKQQATKFH TQTYIETVSK  480
LGLVQMDARS LYKPFLKFSG LEICMWGE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30650.1	1e-104	WRKY family protein