PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021298043.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | ARF | ||||||||
Protein Properties | Length: 808aa MW: 89954.2 Da PI: 6.4776 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.7 | 2.2e-23 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ XP_021298043.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 217 99*****************************8544444..48************************************************..889 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ XP_021298043.1 218 KNQLLLGIRRA 228 9999****997 PP | |||||||
2 | Auxin_resp | 118.2 | 6.9e-39 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka+ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k XP_021298043.1 253 AAHAAATNSCFTIFYNPRASPSEFVIPLSKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 336 79********************************87599******************************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 808 aa Download sequence |
MKLSASGLGQ QGHEGENKCL NSELWHACAG PLVCLPTVGS RVVYFPQGHS EQVAATTNKE 60 VDAHIPNYPN LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTPEEQKDT FLPMELGIPS 120 KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDVEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRATR PQTVMPSSVL 240 SSDSMHIGLL AAAAHAAATN SCFTIFYNPR ASPSEFVIPL SKYVKAVFHT RVSVGMRFRM 300 LFETEESSVR RYMGTITGIS DLDSVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT 360 TFPMYPSLFP LRLKRPWHPG SSSLHDNRDD VANGLMWLRG GSGDQGLHSL NFQSFGSFPW 420 MQQRLDLSFP GNDHTLQYQA MLAPGLQNLG SGDPLRQQLQ QSLQYVQQPG SHNLLLHLQQ 480 QQQQQQQHRA VSQSVPHNML QAQSQILSEN LPPVLGQEQV GNQMEEQAQQ QHNVNQSDQL 540 QQRQPVNMPS AFLKTDFIES AKFSGSVPPA QNMLGSLCGE SSANLLNFSR TGQSMLAEQL 600 PQQSWAPKST HSQNSALFGG NNDSYGLLLP TTMPGFATSS SEADVPSIPL GDTSLQNPLF 660 GCMQNSSELQ STGQVDPPTP TRTFVKVYKS GSVGRSLDIS RFSSYHELRE ELAQMFGIEG 720 KLEDPLRSGW QLVFVDREND ILLLGDDPWE AFVNNVWYIK ILSPEDVQKM GEQRVEPFSP 780 TPGQRMNSSG TGTRDRVSGL SSVGSLEY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | ARF family protein |