PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021298042.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family ARF
Protein Properties Length: 839aa    MW: 93148.7 Da    PI: 6.3197
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021298042.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.72.3e-23127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_021298042.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 217
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_021298042.1 218 KNQLLLGIRRA 228
                     9999****997 PP
2Auxin_resp118.17.3e-39253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k++ka+  ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k
  XP_021298042.1 253 AAHAAATNSCFTIFYNPRASPSEFVIPLSKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 336
                     79********************************87599******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    
MKLSASGLGQ QGHEGENKCL NSELWHACAG PLVCLPTVGS RVVYFPQGHS EQVAATTNKE  60
VDAHIPNYPN LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTPEEQKDT FLPMELGIPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDVEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRATR PQTVMPSSVL  240
SSDSMHIGLL AAAAHAAATN SCFTIFYNPR ASPSEFVIPL SKYVKAVFHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDSVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSLFP LRLKRPWHPG SSSLHDNRDD VANGLMWLRG GSGDQGLHSL NFQSFGSFPW  420
MQQRLDLSFP GNDHTLQYQA MLAPGLQNLG SGDPLRQQLQ QSLQYVQQPG SHNLLLHLQQ  480
QQQQQQQHRA VSQSVPHNML QAQSQILSEN LPPVLGQEQV GNQMEEQAQQ QHNVNQSDQL  540
QQRQPVNMPS AFLKTDFIES AKFSGSVPPA QNMLGSLCGE SSANLLNFSR TGQSMLAEQL  600
PQQSWAPKST HSQVNAFASS TSLPPVFHGK DAIIEPEIGN SDAQNSALFG GNNDSYGLLL  660
PTTMPGFATS SSEADVPSIP LGDTSLQNPL FGCMQNSSEL QSTGQVDPPT PTRTFVKVYK  720
SGSVGRSLDI SRFSSYHELR EELAQMFGIE GKLEDPLRSG WQLVFVDREN DILLLGDDPW  780
EAFVNNVWYI KILSPEDVQK MGEQRVEPFS PTPGQRMNSS GTGTRDRVSG LSSVGSLEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0ARF family protein