PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021297998.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family HD-ZIP
Protein Properties Length: 674aa    MW: 74719.2 Da    PI: 6.4062
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021297998.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox665e-212479156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++ +++t++q+++Le++F+++++p++++r++L+++lgL+ +q+k+WFqN+R++ k
  XP_021297998.1 24 KKSYHRHTAHQIRTLEAYFKECPHPDENQRRQLSNQLGLEPKQIKFWFQNKRTQTK 79
                    688899**********************************************9988 PP
2START132.93.6e-421964153206
                     HHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
           START   3 aeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                     a +a++el+++ +++ep+Wvks+         + +q+ + +k+            ++e +++s++v+m +a+lv  +ld   +W   ++    ka
  XP_021297998.1 196 AASAMDELIRLLQVNEPLWVKSPsdgR-----YLIQRQSYQKTfprathlrspsARIESSKDSALVTMSAAQLVDMFLDAD-KWVDLFPtivtKA 284
                     6789*******************5443.....444444444444555589***9***************************.9999999999999 PP

                     EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
           START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167
                     +t++ +++       g lqlm+  +  lsp v+ R+f+f+R++rq + g wv+vdvS +   +++ +s++ +   lpSg++i++++ng skvtwv
  XP_021297998.1 285 KTIQLLETTmdgntdGSLQLMYEGMHILSPFVApREFYFLRHCRQIETGLWVLVDVSYSYFFFQE-TSHSWK---LPSGCMIQEMQNGCSKVTWV 375
                     999988888888999***************9999******************************9.898888...******************** PP

                     E-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 168 ehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                     ehv++++++  h l+r l+  + a ga +wv tlqr ce+
  XP_021297998.1 376 EHVEVDDKIHtHRLYRDLICGSSAYGAERWVITLQRICER 415
                     ********999***************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    
MDLVMGSSGS SGNEQEVSYS CNGKKSYHRH TAHQIRTLEA YFKECPHPDE NQRRQLSNQL  60
GLEPKQIKFW FQNKRTQTKS QHERADNCAL RAENERIKCE NFAMIEALKM VICPACGGPP  120
IGEEERQRKA ISQSESLMIS IPTSSLGLPP ANFTAQGLGG LPLCTYLDPK HWDNMPLPNQ  180
FNGVTDLEKA LMSETAASAM DELIRLLQVN EPLWVKSPSD GRYLIQRQSY QKTFPRATHL  240
RSPSARIESS KDSALVTMSA AQLVDMFLDA DKWVDLFPTI VTKAKTIQLL ETTMDGNTDG  300
SLQLMYEGMH ILSPFVAPRE FYFLRHCRQI ETGLWVLVDV SYSYFFFQET SHSWKLPSGC  360
MIQEMQNGCS KVTWVEHVEV DDKIHTHRLY RDLICGSSAY GAERWVITLQ RICERLSVSN  420
GETEHIQDLG GVISLPEGRR SIMRLAHRMV KSFCSILNMS GELDFPQLSE ENNSGVRVSV  480
RQSIEPGQPR GMIVSAATSL WLPLPCQSVF NLLNDEKVRF QWDVLCHGNP VKEIVNISTG  540
NTPGNCISII TPSVPSGNIL MLQEMSCTES LGSMVVYAPM GIAAMNTAIN GGDSSNIPIL  600
PSGFIITGDG RSELGVGANS SRSSGSLLTV AFQIMACSPS SSMEPSVQSV ATVNTLISST  660
VQRIKAVLNT FNLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein