PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021297972.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family C2H2
Protein Properties Length: 258aa    MW: 27869 Da    PI: 5.5596
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021297972.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00034106128123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F ++  L  H++ H
  XP_021297972.1 106 FSCNYCQRKFFSSQALGGHQNAH 128
                     89*****************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MMKPVIDIEV EASENESDVS SQVASNLSIQ ETSAAPSNNS LANSSHLTNP LETQSNSELV  60
SLDLTLCITV DESGGRNSAG LSLSSTSESS NDPALRTAAS AIPRVFSCNY CQRKFFSSQA  120
LGGHQNAHKR ERTLAKRAMR MGIFSERYAS LATLPLHGTS FRSLGIKAHC STHQSFAPAA  180
RLPDSRNNAR FEHGYPGLPI FTEDDEAELL WPGSFRQISG EVNTHPGFVL PGSSNMNFVE  240
ITQPIDLESS APDLTLKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.12e-57C2H2 family protein