PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021297674.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Dof

Protein Properties

Length: 521aa MW: 56451.3 Da PI: 6.5913

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021297674.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.1	1.1e-39	161	221	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s XP_021297674.1 161 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 221 7899******************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence
MSEAKDPAIK LFGKTIPLPE KSPKATAAAT SANFCATCGD DNNNNNNNNN IDQDEDRCCS 60 TNSSPDENKT EEREAEKDTL GDETTETEQE VGGIKEDVPR QEGGAPPVTS GESTNLEATS 120 GASENPKTPS VEKESTALKT SKAEEDQSET SNSQGKTLKK PDKILPCPRC NSMDTKFCYY 180 NNYNVNQPRH FCKNCQRYWT AGGTMRNVPV GAGRRKNKNS ASHYRHITVS EALHNARTDI 240 ANGVHHPALK ANGTVLTFGS DTPLCESMAS VLNLADKTMR NTTRNGFHKP EELKIPVSFR 300 GGQNGVEYSN GSSVPTSQDK AGKAGSQDQI MRNCQGFPQM PCFPGPPWPY PWNSAQWSSP 360 IPPPAFCSPG FPMPFYPAAA FWGCTVPGTW NVPWLSQPSS PKKTAPSSGP NSPTLGKHSR 420 DENIGKPSNS GEEEPVKENN AERCLWIPKT LRIDDPGEAA RSSIWATLGI KNDKPDSIGS 480 GGLFKSFQSK GDERNQVPET SPVLQANPAA LSRSINFHES S

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence

MSEAKDPAIK LFGKTIPLPE KSPKATAAAT SANFCATCGD DNNNNNNNNN IDQDEDRCCS  60
TNSSPDENKT EEREAEKDTL GDETTETEQE VGGIKEDVPR QEGGAPPVTS GESTNLEATS  120
GASENPKTPS VEKESTALKT SKAEEDQSET SNSQGKTLKK PDKILPCPRC NSMDTKFCYY  180
NNYNVNQPRH FCKNCQRYWT AGGTMRNVPV GAGRRKNKNS ASHYRHITVS EALHNARTDI  240
ANGVHHPALK ANGTVLTFGS DTPLCESMAS VLNLADKTMR NTTRNGFHKP EELKIPVSFR  300
GGQNGVEYSN GSSVPTSQDK AGKAGSQDQI MRNCQGFPQM PCFPGPPWPY PWNSAQWSSP  360
IPPPAFCSPG FPMPFYPAAA FWGCTVPGTW NVPWLSQPSS PKKTAPSSGP NSPTLGKHSR  420
DENIGKPSNS GEEEPVKENN AERCLWIPKT LRIDDPGEAA RSSIWATLGI KNDKPDSIGS  480
GGLFKSFQSK GDERNQVPET SPVLQANPAA LSRSINFHES S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.1	1e-105	Dof family protein