PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021297669.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

WRKY

Protein Properties

Length: 570aa MW: 61785.4 Da PI: 6.3621

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021297669.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.5	1.8e-30	239	298	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r aed +++++tYeg+Hnh+ XP_021297669.1 239 MNDGCQWRKYGQKTAKGNPCPRAYYRCTVApGCPVRKQVQRYAEDMSILITTYEGNHNHP 298 58*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence
MEVLLMKMPR ADAAVKQEKT AQSVVCEEAC SPEARKTDIG RKLLKNSDLN SSSPSHEGLV 60 DVKEEDELQS AKAEMGEVKE ENERLKMMLE QIQENYKSLQ LRFFEILQQG AIKKSTDSVP 120 SDDDEAPEPE LVSLSLGRSP TNSKKDEKTA SSGKTKEDQE IKAGLTLGLD SKFQLSTEIV 180 SNPSPQNSSE EPKEDDAGET WPPSKIQKTT RNGDEQVAQQ GHVKRARVSV RARCDAPTMN 240 DGCQWRKYGQ KTAKGNPCPR AYYRCTVAPG CPVRKQVQRY AEDMSILITT YEGNHNHPLP 300 VSATAMASTT SAAASMLLSG SSTSQPGLSS TATSTITAEL NGLNFNLHDN SRTRQFYLPN 360 STSPLFPTVT LDLTASPSCS SSYFSRFSTD IPTTATFPSA SLKFSSSESN ILPTVWGNGY 420 PAYGAVPYNQ SHTGNLNHGK ECQEQFYQTF LEKNHQAAAS QHSLTETLTK AITSDPSFRS 480 VIAAAISSTV SSSAKSAVQT DQTAEHFGQN LMQAISQNLL TQNGKGCATR YFTGLTSASS 540 QTGSSLQSSL PISIFNSAST PASDNKDRNN

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence

MEVLLMKMPR ADAAVKQEKT AQSVVCEEAC SPEARKTDIG RKLLKNSDLN SSSPSHEGLV  60
DVKEEDELQS AKAEMGEVKE ENERLKMMLE QIQENYKSLQ LRFFEILQQG AIKKSTDSVP  120
SDDDEAPEPE LVSLSLGRSP TNSKKDEKTA SSGKTKEDQE IKAGLTLGLD SKFQLSTEIV  180
SNPSPQNSSE EPKEDDAGET WPPSKIQKTT RNGDEQVAQQ GHVKRARVSV RARCDAPTMN  240
DGCQWRKYGQ KTAKGNPCPR AYYRCTVAPG CPVRKQVQRY AEDMSILITT YEGNHNHPLP  300
VSATAMASTT SAAASMLLSG SSTSQPGLSS TATSTITAEL NGLNFNLHDN SRTRQFYLPN  360
STSPLFPTVT LDLTASPSCS SSYFSRFSTD IPTTATFPSA SLKFSSSESN ILPTVWGNGY  420
PAYGAVPYNQ SHTGNLNHGK ECQEQFYQTF LEKNHQAAAS QHSLTETLTK AITSDPSFRS  480
VIAAAISSTV SSSAKSAVQT DQTAEHFGQN LMQAISQNLL TQNGKGCATR YFTGLTSASS  540
QTGSSLQSSL PISIFNSAST PASDNKDRNN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	3e-95	WRKY family protein