PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021297459.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

G2-like

Protein Properties

Length: 422aa MW: 45960.2 Da PI: 7.4856

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021297459.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95.2	5.2e-30	207	260	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti+++m+v+gLt+e+v+SHLQkYRl XP_021297459.1 207 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQFMSVDGLTRENVASHLQKYRL 260 59*****************.******************************8 PP
2	Myb_DNA-binding	46.7	7.6e-15	209	259	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r+ WT+++++++vdav+ lG + +ktI++ m g+t++++ s++qky+ XP_021297459.1 209 RLVWTPQLHKRFVDAVAHLGIKnaVPKTIMQFMSvDGLTRENVASHLQKYR 259 789*****************9*************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MRENLRKASD TVLIIKAEKK KTRSTSNLSP LSSIPSLSSD SDLESVLSGL RRGEESASAF 60 CGSTSSSSTV GSCWSKFRFR FVAFAEFSCN NNYNYYHNLC IMTDEDSNWF ARWEEELPSP 120 EELMPLSQTL ITPDLALAFD IRNPNHHHHH HLQQQQQQQQ QPQPPPPPPP SAAGQPPSQP 180 TSAEFAADSG DLGSGAAGDE PARTLKRPRL VWTPQLHKRF VDAVAHLGIK NAVPKTIMQF 240 MSVDGLTREN VASHLQKYRL YLKRMQGLSG GGGGGGGGAN GGAGGASLSA TADPVTDHLF 300 ASSPVPPHFL HPGRSNSEHF LPFVPVPALQ HHHHHQQQQI VAAAVGHPHL QTPYHRQMGH 360 FGSSPNGQFE HPFLGRQTQQ PMHRMGGAPV HNQVPSSYVE DLESANGNGG RKVLTLFPTG 420 DD

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MRENLRKASD TVLIIKAEKK KTRSTSNLSP LSSIPSLSSD SDLESVLSGL RRGEESASAF  60
CGSTSSSSTV GSCWSKFRFR FVAFAEFSCN NNYNYYHNLC IMTDEDSNWF ARWEEELPSP  120
EELMPLSQTL ITPDLALAFD IRNPNHHHHH HLQQQQQQQQ QPQPPPPPPP SAAGQPPSQP  180
TSAEFAADSG DLGSGAAGDE PARTLKRPRL VWTPQLHKRF VDAVAHLGIK NAVPKTIMQF  240
MSVDGLTREN VASHLQKYRL YLKRMQGLSG GGGGGGGGAN GGAGGASLSA TADPVTDHLF  300
ASSPVPPHFL HPGRSNSEHF LPFVPVPALQ HHHHHQQQQI VAAAVGHPHL QTPYHRQMGH  360
FGSSPNGQFE HPFLGRQTQQ PMHRMGGAPV HNQVPSSYVE DLESANGNGG RKVLTLFPTG  420
DD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10760.1	1e-84	G2-like family protein