PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021297187.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

WRKY

Protein Properties

Length: 376aa MW: 41218.1 Da PI: 6.5273

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021297187.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	84	1.5e-26	198	258	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqKe+ gs++pr+YYrCt++ +Cp+kk+v+r ++d ++e+tY ++H+++ XP_021297187.1 198 EDNFTWRKYGQKEILGSRYPRAYYRCTHQklyNCPAKKQVQRLDNDFYTFEVTYISQHTCH 258 79*************************999*************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MFKSETDKAK RKRPDQTMEE TFSLILHGCK LAKDLESNLG NLASQPEILS KSCDDIVKVF 60 AAAKGRLNAD QDPASFTQLL RESPSSSQQP QQSTDPSLQE WLKYGVITQA MDMIQQKVLA 120 GKAPFETNEM GGKNLLEGSA SARLKGSVVG EIQAMELSDS GRGSSSSSQR PRRRKDDEEK 180 RTMTVPAPQM GNTDLPPEDN FTWRKYGQKE ILGSRYPRAY YRCTHQKLYN CPAKKQVQRL 240 DNDFYTFEVT YISQHTCHMS STAPSIPPPP PLETGTQDQI MTQAMVSQPT PASSSSVPLG 300 RWLSMEFNSL ASASCGSGSG GAGGSTASAR YGREVDYPAV ADLADVMFNS GSSSSNSMEF 360 IFPSVEDKWE AGDKKN

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MFKSETDKAK RKRPDQTMEE TFSLILHGCK LAKDLESNLG NLASQPEILS KSCDDIVKVF  60
AAAKGRLNAD QDPASFTQLL RESPSSSQQP QQSTDPSLQE WLKYGVITQA MDMIQQKVLA  120
GKAPFETNEM GGKNLLEGSA SARLKGSVVG EIQAMELSDS GRGSSSSSQR PRRRKDDEEK  180
RTMTVPAPQM GNTDLPPEDN FTWRKYGQKE ILGSRYPRAY YRCTHQKLYN CPAKKQVQRL  240
DNDFYTFEVT YISQHTCHMS STAPSIPPPP PLETGTQDQI MTQAMVSQPT PASSSSVPLG  300
RWLSMEFNSL ASASCGSGSG GAGGSTASAR YGREVDYPAV ADLADVMFNS GSSSSNSMEF  360
IFPSVEDKWE AGDKKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	175	PRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40740.1	4e-50	WRKY family protein