PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021297071.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

WRKY

Protein Properties

Length: 298aa MW: 34454.3 Da PI: 7.5197

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021297071.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	83.7	1.8e-26	130	191	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg +WrKYGqKe+ +s++prsY+rCt + gC+++k+v+r ++dp++++++Y g+H+++ XP_021297071.1 130 MEDGQAWRKYGQKEILNSKHPRSYFRCTRKydqGCRATKQVQRMEDDPQMFQTVYIGNHTCR 191 58************************998899***********************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence
MGTSLCPWPE RLSSNKKRVI QELVHGQECA TQLQILFHKP SEEGGXXXXE ELVQKILRSF 60 NETISVLSSC DSAQVSRNKA TNSNYDSPCC DDRRSEDSTE SRKRPYSKDR RGCYKRKRAA 120 NTWTVISAAM EDGQAWRKYG QKEILNSKHP RSYFRCTRKY DQGCRATKQV QRMEDDPQMF 180 QTVYIGNHTC RDSSKAPQII TDHSEPWKSY NMVTSGDSKI SSKQQHHHHR HHHCLNPSPT 240 NPTVKQESKE ETTASDLTDW DPIVWKDITG LSGFDYMDLE IKPVEFQSDF TFDESEFV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	118	RKRPYSKDRRGCYKRKR
2	115	142	KRKRAANTWTVISAAMEDGQAWRKYGQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	1e-54	WRKY family protein