PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021296915.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

G2-like

Protein Properties

Length: 481aa MW: 52665.9 Da PI: 5.9531

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021296915.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.3	6.3e-32	258	311	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 r+rWtpeLHe+Fveav +L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYRl XP_021296915.1 258 LRMRWTPELHECFVEAVGKLDGPEKATPKGVLKLMNVEGLTIYHVKSHLQKYRL 311 69***************************************************8 PP
2	Myb_DNA-binding	52.7	9.6e-17	259	310	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+e++e +v+av +l g+ t+k + + m+ +g+t +++ks++qky+ XP_021296915.1 259 RMRWTPELHECFVEAVGKLDGPekaTPKGVLKLMNvEGLTIYHVKSHLQKYR 310 89*************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence
MKVGMSSKTM NHPSYISVTQ GEPSKGIGES YHTAASPIHN FLSIGSEGQS SLAGECSSPH 60 PFPFIRTESF KNNLKSAPSS RISPGSHAKS AFSRSSVFCT SLYLSSSSTS ETQRQLGNLP 120 FLPHPPTCSQ SISAVDSSKS PVVFSEDLRN PYNEDHSEII MKDFLNFPGD DCDGNFHGLH 180 CESDNFTLTE QLELQFLSDE LDIAIADHGE NPRLDEIYET PQKLNVALTC NQNSASVAPS 240 IDAPASIQLS GPAAVPKLRM RWTPELHECF VEAVGKLDGP EKATPKGVLK LMNVEGLTIY 300 HVKSHLQKYR LAKYMPEKKE EKKTSSSEEK KAALSSNESD GKKKGGTHIT EALRMQMEVQ 360 KQLHEQLELQ RSLQLRIEEH ARYLQKILEE QQKAGSALIP SLSLSTPTDP SQNSELQPSS 420 SAIASPSQPS ESKTELSSSL PSKHKAPEVN DCEPESSPKK LRIENKPESA ADEAVVENPV 480 Q

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence

MKVGMSSKTM NHPSYISVTQ GEPSKGIGES YHTAASPIHN FLSIGSEGQS SLAGECSSPH  60
PFPFIRTESF KNNLKSAPSS RISPGSHAKS AFSRSSVFCT SLYLSSSSTS ETQRQLGNLP  120
FLPHPPTCSQ SISAVDSSKS PVVFSEDLRN PYNEDHSEII MKDFLNFPGD DCDGNFHGLH  180
CESDNFTLTE QLELQFLSDE LDIAIADHGE NPRLDEIYET PQKLNVALTC NQNSASVAPS  240
IDAPASIQLS GPAAVPKLRM RWTPELHECF VEAVGKLDGP EKATPKGVLK LMNVEGLTIY  300
HVKSHLQKYR LAKYMPEKKE EKKTSSSEEK KAALSSNESD GKKKGGTHIT EALRMQMEVQ  360
KQLHEQLELQ RSLQLRIEEH ARYLQKILEE QQKAGSALIP SLSLSTPTDP SQNSELQPSS  420
SAIASPSQPS ESKTELSSSL PSKHKAPEVN DCEPESSPKK LRIENKPESA ADEAVVENPV  480
Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.1	1e-103	G2-like family protein