PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021296860.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 933aa    MW: 106767 Da    PI: 6.2033
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021296860.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS773.4e-246829387334
            GRAS  87 vsPilkf...shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                       P++ f      ++ +aIl a+ g++rvHiiDf   ++  W  +++  +  ++ p s+R+ +v+ p     ++l +t+    +    ++v+ ef
  XP_021296860.1  68 NIPFVYFprpHRSICEKAILSAMMGKKRVHIIDFLQPNPDDWEDIIEDSSRGSGRPSSIRLSVVALPF---LKNLYATA----EETMLVNVDWEF 155
                     4455555221235789*******************************9776667777********944...33444443....455678****** PP

            GRAS 179 nvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                     ++++ + l d+e +eL++++  +E ++V  v++l rll+++ ++e      L  +++++P+ v+ veq+a+hn+ +F++ + + le   ++    
  XP_021296860.1 156 KLVIGNGLGDVEASELEFRRteDEIVIVRYVYKLNRLLAQPEAMER----ELLKLRQIKPEFVITVEQDANHNDFNFVDSLESILEESESV---- 242
                     ******************9999*********************999....55568********************9987665555544444.... PP

            GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhet.lekWrerleeaGFkpvplsekaa 334
                                  +   +  + ++ +v c g + +er et +++Wr+ l++aGF p pl+++ +
  XP_021296860.1 243 -------------LNIYYYTWLAMCAVECDGMNGIERSETtMAQWRSLLHAAGFLPFPLNQSST 293
                     .............444555566677899999999998875278***************998754 PP
Sequence ? help Back to Top
Protein Sequence    Length: 933 aa     Download sequence    
MGSPVLVYLK ACAQAFRDGN LKLADQLLDR IWNPATNELE SLKAESVAKK RRRCAEVLVR  60
RAYRLYPNIP FVYFPRPHRS ICEKAILSAM MGKKRVHIID FLQPNPDDWE DIIEDSSRGS  120
GRPSSIRLSV VALPFLKNLY ATAEETMLVN VDWEFKLVIG NGLGDVEASE LEFRRTEDEI  180
VIVRYVYKLN RLLAQPEAME RELLKLRQIK PEFVITVEQD ANHNDFNFVD SLESILEESE  240
SVLNIYYYTW LAMCAVECDG MNGIERSETT MAQWRSLLHA AGFLPFPLNQ SSTTGVFVQE  300
ENGCLVVSVE EWPPVIISAW KFTDSVHHSI SIQGSHQNSL YNNVLQTFEV LTECFTLNRV  360
AAVAEMYDLV QYVCLKYELP LGLTWTCWAN VKQLPTEVML DPYTKGTLFI QKPACYDNDE  420
ASHELMNTCE RHQFVVEGQA IAGKLLQSNE SLFVQDITEL DERDYPFANA ARKFGPRAAL  480
AISFCNPYVG DDVYVLEFYF PSSKKNLEEP ELLKDRILHD LENIQKKFVR PRVVHGTAPV  540
GVRGEAISNS TQEVKLALRN SLPVPASTTG HNLFNSNETR SLNTTGAMDR HHVGTDNIQD  600
EQGAQIENRR AINSEMVKAN GAISPVPRTK RRKLVSVVWE HFTRFRKNGL EWAKCNYCDK  660
DLTGSSRSGT THLKNHLERC SSKKVKFPAQ SGGASEGNSS FDQERTRLEF AKTIIKNQCL  720
LDAVEDESYK KILSTLQPTF QLQSRRIILS DINRLYKEEK EKLRQYFGQL DSNFSLTIEF  780
WADDVRLNDY CCLVAYFIDG DWKLKKKIIA FKILEGFCTV SEIIRRSLSE WNISKKICSI  840
TVNSSVLKDG VVEQIKEYCL SGQAFLPSGG CYIRCTLIED CLLEIDDLLL KIMKLKGYIF  900
GIPWRRLNFS CFDLLDWVLR SRERLEQNND NFE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.15e-32GRAS family protein