PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021296799.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family C2H2
Protein Properties Length: 288aa    MW: 31466.3 Da    PI: 9.4758
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021296799.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-05108130123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C++ Fs++  L  H++ H
  XP_021296799.1 108 FSCNYCKREFSTSQALGGHQNAH 130
                     89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MPPKFHPKTK YLLAMVIIGA EPCPSEASSI SAALEGVTPN KVNEAAKPSE SSPGILLDLK  60
LFSDNSLCKP KIELNLFNPI SPTSSHSKDS GDHQTSREKR SNDSNKVFSC NYCKREFSTS  120
QALGGHQNAH KQERALAKRR QGMDVNGFGL PPYPYYPYAT ISPHPFYGSL NRSSLGVRLD  180
SMINKTLYPS TLVNGFHHLN HGWPRQAMLT PSRPTINERL SMNNGGFGIS GPSSSSRFQE  240
TGAPLNFSDI SQVNVPTNKA TRSDYLLPSN LSGSDNNNAS EIDLSLKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.17e-20C2H2 family protein