PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021296783.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family NF-YC
Protein Properties Length: 302aa    MW: 35086.7 Da    PI: 6.9158
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021296783.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC132.99.6e-42141241298
           NF-YC   2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     l+ fw +q   i + + fk +h+lPlarik+i+k+d+dvkmisa++Pvl+skacelfileltlr+wl+ ee k rtl++sdia a+ + +  dfl
  XP_021296783.1 141 LELFWYQQmmeIHNISAFKsHHQLPLARIKRIMKSDKDVKMISADTPVLFSKACELFILELTLRAWLQMEEGKHRTLQRSDIARAIRQEEGLDFL 235
                     789****964455667788889************************************************************************* PP

           NF-YC  93 vdivpr 98 
                     vd+vp 
  XP_021296783.1 236 VDVVPL 241
                     ****96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MDISGGSWGM DLRILASRFS YNFRLVSIVS GSSCFFWLNG KLHLLKADTL IIEKVKNGEI  60
ILLDAYKRKT IPWGLDIKRP LAERLTMDLN QSIEFTPSST LSPHIHNFLP MTSFMLSFHQ  120
PSKEDGEELK RSHLLIQKRN LELFWYQQMM EIHNISAFKS HHQLPLARIK RIMKSDKDVK  180
MISADTPVLF SKACELFILE LTLRAWLQME EGKHRTLQRS DIARAIRQEE GLDFLVDVVP  240
LINQKDDHVK FAEENECDPI NQLQFPVLDM NADLVMRSPE VQHLMIKTPM SNDEFNYESA  300
TR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.11e-39NF-YC family protein