PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021296703.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 313aa MW: 36020.4 Da PI: 8.6172

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021296703.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	50	4.8e-16	240	264	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tGtC+yGd+C+FaHg XP_021296703.1 240 KTELCNKWQETGTCPYGDQCQFAHG 264 8***********************8 PP
2	zf-CCCH	25.9	1.7e-08	277	302	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr +++ C+yG rC+F H+ XP_021296703.1 277 YKTEVCRVVLAGQACPYGHRCHFRHS 302 9********99********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence
MEKPRSSSSN QNATVDNQNY VSLSPPSSPL QNHHRYRQDI ATDFFSMYNS IFPPNSPLPY 60 SLSLTPSSCS SSDDLHLDLK FTSDATATEH RLNQARLILE YRQLCDHYEL CFTRLQALIR 120 ELESLRKENT DLRTANTELI KLLSLHSSSQ AAMNRNLQRE EVSDLNVKTW ERRSSNGQRN 180 SLPKSVSVRS SSYLKVNQQQ GSSNQQRVFN PSRRMYVPPE AKKELENAME LEVYNQGTVK 240 TELCNKWQET GTCPYGDQCQ FAHGITELRP VIRHPKYKTE VCRVVLAGQA CPYGHRCHFR 300 HSLTEQERLL IPR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	4e-77	C3H family protein