PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021296687.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 418aa    MW: 46458 Da    PI: 7.7958
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021296687.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS327.13.4e-100374171374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl cA++ ssg+l++a+++L ++s las +gd++qRl   f+ ALa rl++ +++l kal+ ++ +    +e   a  l+  ++P+l +s+
  XP_021296687.1  37 LIQLLLICAKHASSGNLHRADECLRQISLLASVSGDSIQRLSVRFASALAIRLVKRWPGLHKALNYTQLT---KQEFDDAKPLLGRAFPYLGLSY 128
                     689******************************************************************9...5666677899************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                      +  +++ +a+ ge+ +H +D++ +    W++Ll++L++ p+gpp+l++T +++    +k  + ++g rL k Ae+l + f+fn+l   +l++l+
  XP_021296687.1 129 AIITRTLIKAMMGERVIHLVDMGSGDVNLWVPLLRTLSCMPDGPPHLKVTCMNA----NKAVVDKLGARLVKEAEALAMAFQFNPL-NVSLKELT 218
                     ******************************************************....99*************************5.889***** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll...............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                      ++L+v++gEala  ++l+lh ll                +  + +++  ++L +++sl Pkv+ vveqeadhn +++++rf+e l+yysa+fds
  XP_021296687.1 219 SDMLKVRSGEALAFISILSLHALLaeddrvdahfgdnrnINGIKNSKQMCHFLTMIRSLWPKVLLVVEQEADHNLNRLVDRFMEGLHYYSAVFDS 313
                     ***********************************9987344444446778******************************************** PP

            GRAS 271 leaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                     ++a ++ +s  er+ +E + +g+ei+n+vaceg er+erhe+ ++W  rl++aGFkpv++ ++ +++akl+++  ++dgy++ + +++ +++W+d
  XP_021296687.1 314 IDAAFGGTSsGERHALEGM-FGKEIENIVACEGVEREERHERHGRWMVRLGQAGFKPVQIWYDSMEDAKLMVEASGKDGYKIVQGKAASMICWHD 407
                     *999999887999999999.*************************************************************************** PP

            GRAS 365 rpLvsvSaWr 374
                     rpL++vSaW+
  XP_021296687.1 408 RPLYAVSAWT 417
                     *********6 PP

Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    
MTTSSPAPGP EVSLSLTLLP CPTPLEALKP EERGIRLIQL LLICAKHASS GNLHRADECL  60
RQISLLASVS GDSIQRLSVR FASALAIRLV KRWPGLHKAL NYTQLTKQEF DDAKPLLGRA  120
FPYLGLSYAI ITRTLIKAMM GERVIHLVDM GSGDVNLWVP LLRTLSCMPD GPPHLKVTCM  180
NANKAVVDKL GARLVKEAEA LAMAFQFNPL NVSLKELTSD MLKVRSGEAL AFISILSLHA  240
LLAEDDRVDA HFGDNRNING IKNSKQMCHF LTMIRSLWPK VLLVVEQEAD HNLNRLVDRF  300
MEGLHYYSAV FDSIDAAFGG TSSGERHALE GMFGKEIENI VACEGVEREE RHERHGRWMV  360
RLGQAGFKPV QIWYDSMEDA KLMVEASGKD GYKIVQGKAA SMICWHDRPL YAVSAWTC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-99GRAS family protein