PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021296641.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family M-type_MADS
Protein Properties Length: 262aa    MW: 30006.7 Da    PI: 8.7961
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021296641.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.72.3e-16948140
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                    k ien+  r+  f kRrn +lKKA+ELS+LCd++++viif
  XP_021296641.1  9 KVIENEKARKRVFEKRRNNLLKKAKELSILCDIKILVIIF 48
                    679************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MGKRKMEMKV IENEKARKRV FEKRRNNLLK KAKELSILCD IKILVIIFEL GQPKAQIWPG  60
NDEEATQIIN RFKQQPVKGG SQKAYCDSFA SKKKNFGEKF PMINRFSENQ LQNLCYELDA  120
KMAAVMNAIK SKQVLTEGPM PNMIAAECQG KGFLNNGRGK EVDIYQEPIP IQQDQSFEML  180
YHKPNFMESP MMVMQNDISY PQFDGSTGSS NIPYVPLPIH HVDPSWMQPA YVSYYDPTIH  240
HIPPGTYYPV MPSFPSLMNE SG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.23e-13M-type_MADS family protein