PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021296557.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 606aa    MW: 65912.2 Da    PI: 4.9033
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021296557.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS459.22.5e-1402365981374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAeav++++l+la+al++++  la++++ +m+++a+yf+eALa+r++r    +y    p+++ + + ++ l++   f+e++P+lkf+h
  XP_021296557.1 236 LVHTLMACAEAVQQDNLKLADALVKHIGLLAASQAGAMRKVATYFAEALARRIYR----IY----PQDSLDPSYTDILQM--HFYETCPYLKFAH 320
                     689****************************************************....44....444433234444433..5************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea+++++ vH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++A+++gv+fef+ + a++l+dle
  XP_021296557.1 321 FTANQAILEAFATANSVHVIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNSDALQQVGWKLAQLADTIGVEFEFRGFFATSLADLE 415
                     *********************************************************************************************** PP

            GRAS 191 leeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +e+L+++p   Ea+aVn+v++lhrll++++ +e+    vL+ +k ++Pk+++vveqea+hn++ F++rf+eal+yys+lfdsle +  +  +++ 
  XP_021296557.1 416 PEMLEIRPpeVEAVAVNSVFELHRLLARPGGIEK----VLSSIKAMKPKILTVVEQEANHNGPFFVDRFTEALHYYSSLFDSLEGSGVAPPSQDL 506
                     ********9999*********************9....*********************************************777666778899 PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++++ +lgr+i+nvvaceg +r+erhetl +Wr r+e+aGF+pv+l+++a+kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+
  XP_021296557.1 507 VMSELYLGRQICNVVACEGMDRIERHETLTQWRTRMETAGFSPVHLGSNAYKQASMLLALFAgGDGYRVEENNGCLMLGWHTRPLIATSAWQ 598
                     999999*************************************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    
MKREHEEICG ATSYGSGSGS KAESSTIGNP NKGKLWEEEQ DAGGMDELLA VLGYKVRYSD  60
MADVAQKLEQ LEMVMGTAQE DGISHLSCDT IHYNPSDLSG WVQSMLTELN NPAAVNLDPV  120
LGNSNSNSSI LGQINHDPSK PQRQQQLVSS NQSQVYNDDS EYDLRAIPGV AANPPPKSES  180
DSESTRKRMK TSIGSSGSTG YGSSSSSPQG IGVSGAVTES TRPVVLIDSQ ETGVRLVHTL  240
MACAEAVQQD NLKLADALVK HIGLLAASQA GAMRKVATYF AEALARRIYR IYPQDSLDPS  300
YTDILQMHFY ETCPYLKFAH FTANQAILEA FATANSVHVI DFGLKQGMQW PALMQALALR  360
PGGPPAFRLT GIGPPQPDNS DALQQVGWKL AQLADTIGVE FEFRGFFATS LADLEPEMLE  420
IRPPEVEAVA VNSVFELHRL LARPGGIEKV LSSIKAMKPK ILTVVEQEAN HNGPFFVDRF  480
TEALHYYSSL FDSLEGSGVA PPSQDLVMSE LYLGRQICNV VACEGMDRIE RHETLTQWRT  540
RMETAGFSPV HLGSNAYKQA SMLLALFAGG DGYRVEENNG CLMLGWHTRP LIATSAWQLA  600
TTESGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.10.0GRAS family protein