PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021296341.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family TCP
Protein Properties Length: 427aa    MW: 47126.9 Da    PI: 9.1096
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021296341.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1493.2e-461132653136
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssssasnss 86 
                     +kkdrhski+T++g RdRRvRls+e+a++fFdLqd+LGfdk+skt+eWLl+++k ai el++            s+ss+ ece ++++   +   
  XP_021296341.1 113 VKKDRHSKICTAQGVRDRRVRLSIEIAREFFDLQDMLGFDKASKTLEWLLTKSKNAIGELVKMkhgngssggqrSFSSSPECEMVAENGDLDGG- 206
                     79*************************************************************9999988888877777777444444333322. PP

             TCP  87 sg...........kaaksaa.kskksqksaasalnlakesrakarararertrekmriknkl 136
                      +           +    ++ k kk qk +  ++ lakesra+arararertr+km++++++
  XP_021296341.1 207 -ElegttskckslEGIVCKEkKMKKLQKAT--VHLLAKESRAEARARARERTRKKMCTRSST 265
                     .13466767766633333331333333333..599***********************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    
MQLHFAKTEY AKMFSSTNKF INTFAHLPSS SYHPPPPPLI SHDSNDXFPH HHHDLPSPGS  60
LLPPNPHFTE SLINMALFNN AAAMSKQDGG GGGALHGECF GTSSFGIPVR NHVKKDRHSK  120
ICTAQGVRDR RVRLSIEIAR EFFDLQDMLG FDKASKTLEW LLTKSKNAIG ELVKMKHGNG  180
SSGGQRSFSS SPECEMVAEN GDLDGGELEG TTSKCKSLEG IVCKEKKMKK LQKATVHLLA  240
KESRAEARAR ARERTRKKMC TRSSTTTHEW KRCPDTSPQF LNPLRSLTQL EASKESEHSY  300
GHNMASFEVF AHQVEQPSPC QLTSAASREN AIEESIVIKR KLKPSTILGS QQNLAASTGV  360
SCSTSGNNYF PNLPQNWDIN GAMAHSTFCT ITNVNLSTGV QMRGQLAIND YSTYAVPEHL  420
RYSMSKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251259ARERTRKKM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.23e-29TCP family protein