PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021295804.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

NF-X1

Protein Properties

Length: 478aa MW: 54313.6 Da PI: 8.6056

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021295804.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	18.8	3.6e-06	4	23	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C++ C+ G+CppC++ XP_021295804.1 4 CGRHACKRRCCDGNCPPCSE 23 ******************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence
MRDCGRHACK RRCCDGNCPP CSEVCDKRLR CKNHKCPAPC HRGACAPCPV IVTISCACGE 60 THFEVPCGTE MDQKPPKCRK LCQITPLCRH ASNLKPHRCH YGACPQCRLL CEEEYPCGHK 120 CNLRCHGPRP PPNPEFMLKP KKKKLNHQNE CTPGTPCPPC PELVWRPCVG QHVGAERMMV 180 CSDRARFSCD NLCGNLLPCG NHYCTKTCHP LEIQSSLSGY HKRSESCEEC NLPCQKERMP 240 KCSHPCPLPC HPGECPPCKV LVKRSCHCGA MVHAFECIYY NSLSEKDQVA VRSCGGPCHR 300 KLPNCTHLCP ETCHVGQCPA PDKCSKRVTV RCKCQTLKKE WVCQDVQAAY RDTGCDPKDI 360 SKNQFGLGLL PCNSDCKSKI QEVDSSLQLR KPKVLEKKDP ELEKHRPKRR KRRDQFQEGK 420 QVSRLQQFVA TMKRLLLYII IVLALIVVTY YGYKGLLRLS DWMNDIEAQR ERRRHPRI

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence

MRDCGRHACK RRCCDGNCPP CSEVCDKRLR CKNHKCPAPC HRGACAPCPV IVTISCACGE  60
THFEVPCGTE MDQKPPKCRK LCQITPLCRH ASNLKPHRCH YGACPQCRLL CEEEYPCGHK  120
CNLRCHGPRP PPNPEFMLKP KKKKLNHQNE CTPGTPCPPC PELVWRPCVG QHVGAERMMV  180
CSDRARFSCD NLCGNLLPCG NHYCTKTCHP LEIQSSLSGY HKRSESCEEC NLPCQKERMP  240
KCSHPCPLPC HPGECPPCKV LVKRSCHCGA MVHAFECIYY NSLSEKDQVA VRSCGGPCHR  300
KLPNCTHLCP ETCHVGQCPA PDKCSKRVTV RCKCQTLKKE WVCQDVQAAY RDTGCDPKDI  360
SKNQFGLGLL PCNSDCKSKI QEVDSSLQLR KPKVLEKKDP ELEKHRPKRR KRRDQFQEGK  420
QVSRLQQFVA TMKRLLLYII IVLALIVVTY YGYKGLLRLS DWMNDIEAQR ERRRHPRI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	404	413	KHRPKRRKRR
2	407	413	PKRRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein