PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021295698.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 481aa    MW: 54303.5 Da    PI: 6.2063
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021295698.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS451.94.1e-138484751373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA++v++g+le+a+  L+++s+laspdgd+mqR+aayfteALa r+++ +++l kal++++ s  +++ee+ ++kl++e++P+lk+++
  XP_021295698.1  48 LIHLLVQCANHVAAGSLENANIGLEQISHLASPDGDTMQRIAAYFTEALADRMLKAWPGLHKALNSTKIS--SVTEEILVQKLYFELFPFLKLAY 140
                     689*************************************************************999998..6********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +++NqaI+ea+ege++vHiiD++ s+++QW++L+q++++Rpegpp+lRiTg+++    ++e le+++ rL++ Ae+l++pf+fn+ ++ +le+l+
  XP_021295698.1 141 VITNQAIVEAMEGEKMVHIIDLNSSEPAQWINLFQTFSARPEGPPHLRITGIHE----QREVLEQMALRLTEEAEKLDIPFQFNP-IVCKLENLD 230
                     ******************************************************....9**************************.5788***** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll............................................................desvsles..e 223
                     le+Lrvk+gEalaV++vlqlh++l                                                            ++++sl+   +
  XP_021295698.1 231 LESLRVKTGEALAVSSVLQLHSFLatddemlrrninspsvsknlnssrphrvlqmnqrtlgewlekepvhtyspsssdlaspspSSPLSLAPapK 325
                     **********************************************************************************9966666665557 PP

            GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrer 318
                       ++L +++  sPk++vv+eqe++hn+++++er++eal++y+alfd+le++++r+  er+kvE++l+g+ei+n++aceg er+erhe+lekW  r
  XP_021295698.1 326 LGSFLTALRAQSPKLIVVTEQESNHNGPTLMERVMEALNFYAALFDCLESTVSRAPLERQKVEKMLFGEEIKNIIACEGLERKERHEKLEKWILR 420
                     889******************************************************************************************** PP

            GRAS 319 leeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     le aGF+ vpls++ + qa +ll++ + dgy+++ee+g+lv++W++rpL+s+SaW
  XP_021295698.1 421 LELAGFGRVPLSYHGMLQAGRLLQTNNYDGYKIKEENGCLVMCWQERPLYSMSAW 475
                     ******************************************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    
MAGMIQERPS SVTSPPVPFI PWMSLSPGLG SPFPWLRELK SEERGLYLIH LLVQCANHVA  60
AGSLENANIG LEQISHLASP DGDTMQRIAA YFTEALADRM LKAWPGLHKA LNSTKISSVT  120
EEILVQKLYF ELFPFLKLAY VITNQAIVEA MEGEKMVHII DLNSSEPAQW INLFQTFSAR  180
PEGPPHLRIT GIHEQREVLE QMALRLTEEA EKLDIPFQFN PIVCKLENLD LESLRVKTGE  240
ALAVSSVLQL HSFLATDDEM LRRNINSPSV SKNLNSSRPH RVLQMNQRTL GEWLEKEPVH  300
TYSPSSSDLA SPSPSSPLSL APAPKLGSFL TALRAQSPKL IVVTEQESNH NGPTLMERVM  360
EALNFYAALF DCLESTVSRA PLERQKVEKM LFGEEIKNII ACEGLERKER HEKLEKWILR  420
LELAGFGRVP LSYHGMLQAG RLLQTNNYDG YKIKEENGCL VMCWQERPLY SMSAWGFRRY  480
D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein