PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021295682.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 481aa MW: 54908.4 Da PI: 9.7415

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021295682.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.4	0.00059	172	211	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rR +++ ++ L++l+ + +K + a++L++A YIk Lq XP_021295682.1 172 RRSQKLSDKTTALQKLVSPY-----GKTDTASVLQEASLYIKLLQ 211 68889999999999999998.....9****************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence
MRNALLPPVS SQFYTIGNNE VQMPYLDVLM QMESKGNVHG GGFSMESKIF NNDTQLRDGA 60 FATPYQSHFN SDLQDYQSGS SNCDNNFQQS MPLTSKLALP QFEQDIQKLK NGRKRPIEVN 120 DQMPLNGTSA LNEWKQKNKR KRLPPFEQQQ SHQITEAVTE IKQCRMHMPA VRRSQKLSDK 180 TTALQKLVSP YGKTDTASVL QEASLYIKLL QEQIQNLFQM LSSSYNSLRA IHPQEIGTKQ 240 QDLRSRGLCL VPISFSQKVT KEDQKEKRES KEKRGKKSSK IKRLGGHFHA VIPNPKNXEK 300 KFISTFLLPF LSLSFSEEAL DFLRLFSLFP SLSREKNGKH SSPANAASGM AVDDDCKLKF 360 LELKAKRTYR FIVFKIEEKQ KQVVVEKLGE PTDSYEAFTA SIPADECRYA VYDFDFVTEE 420 NCQKSRIIFI AWSPDTAKVR SKMIYASSKD RFKRELDGIQ VELQATDPTE MGLDVIKSRA 480 T

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence

MRNALLPPVS SQFYTIGNNE VQMPYLDVLM QMESKGNVHG GGFSMESKIF NNDTQLRDGA  60
FATPYQSHFN SDLQDYQSGS SNCDNNFQQS MPLTSKLALP QFEQDIQKLK NGRKRPIEVN  120
DQMPLNGTSA LNEWKQKNKR KRLPPFEQQQ SHQITEAVTE IKQCRMHMPA VRRSQKLSDK  180
TTALQKLVSP YGKTDTASVL QEASLYIKLL QEQIQNLFQM LSSSYNSLRA IHPQEIGTKQ  240
QDLRSRGLCL VPISFSQKVT KEDQKEKRES KEKRGKKSSK IKRLGGHFHA VIPNPKNXEK  300
KFISTFLLPF LSLSFSEEAL DFLRLFSLFP SLSREKNGKH SSPANAASGM AVDDDCKLKF  360
LELKAKRTYR FIVFKIEEKQ KQVVVEKLGE PTDSYEAFTA SIPADECRYA VYDFDFVTEE  420
NCQKSRIIFI AWSPDTAKVR SKMIYASSKD RFKRELDGIQ VELQATDPTE MGLDVIKSRA  480
T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	8e-19	bHLH family protein