PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021295287.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 1584aa MW: 175762 Da PI: 6.6345

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021295287.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00033	1469	1494	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C C++sF +k++L+ H r+ + XP_021295287.1 1469 HRCDleGCNMSFETKEELRLHKRNrC 1494 789999****************9877 PP
2	zf-C2H2	10.9	0.0015	1493	1516	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk+F+++ + H+r+H XP_021295287.1 1493 RCPyeGCGKRFRSHKYAILHQRVH 1516 69999*****************99 PP
3	zf-C2H2	11.4	0.00098	1552	1578	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ Cg sF+ s++ rH r+ H XP_021295287.1 1552 YKCKvvGCGLSFRFVSDFSRHRRKtgH 1578 9**********************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1584 aa Download sequence
MGNVEIPNWL KGLPLAPEFR PTDTEFADPI AYISKIEKEA GAYGICKIIP PLPKPSKKYV 60 FNNLNRSLSK SPELGSDMDV SKNVGSISSC RDSGGEEGEG EGRAVFTTRH QELGQSGKKM 120 KAAVSSLQCG VHKQVWQSGE IYTLEQFESK SKTFAKSLLS VLKEVSPLHI EALFWKVASE 180 KPIYVEYAND VPGSGFGEPE GQFRYFHRRR RRRRKRMSYR RENADCKKDE MNTVHNSRID 240 EIKDTCVKSD QNTCFETPKI SPTSSTMASD DNSHSKRKSG DASNDMEGTA GWKLSNSPWN 300 LQVIARSAGS LTRFMPDDIP GVTSPMVYIG MLFSWFAWHV EDHELHSMNF LHTGSSKTWY 360 AVPGDYAYAF EEVIRTEAYG GNIDRLAALS LLGEKTTLLS PELIVASGIP CCRLIQNPGE 420 FVVTFPRAYH VGFSHGFNCG EAANFGTPQW LQVAKEAAVR RAAMNYLPML SHQQLLYLLT 480 MSFVSRVPRS LLPGARSSRL RDRQKEEREL LVKKAFIEDM LTENKLLSLL LKRGSTYRAI 540 IWDPDLLPYA SKDSELPSET AAVSTIPQEN VADIHSKNNT NQNNLLDEMS LYMENLNYLY 600 LNEDDLSCDF QVDSGTLACV ACGILGYPFM SVVQPSEGTL ELLPADHLSV QGPAVLESKN 660 THSCPDLDHP VEGSVSDNVH LVADQSQPPK DATSPSITKF CQGWDTSNIH LRPRIFCLEH 720 AVQVEEILQS KGGAKMLVIC HSDYQKIKAH AIPVAEDIGI TFNYNDVALD AASQEDLNLI 780 NLAIDDEHDE IGEDWTSKLG VNLRYCVKVR KNSPFKQVQH ALPLGGLFSD KYGSPELFNI 840 KWQSRKSRSK GKLNHPSSKP CESIELKVDE LLVEKLDGNI PKTELKIIQY SRRKKRKPDY 900 STGAGGCLEL VKDDLPREDS AATCELPDEH GGSKSKINAE SDSSVLFSSP STRASQTQPE 960 IQTSSVVGVV QKDHGKILQE SNLNGEGCSL AACASSQKHC EIKLMERTTE NNELSLADKC 1020 SKSSVIAACE RYKESTGAIC EVCNPVYEGQ CEELAARHDL INLANSANSL SAQPSAGRFD 1080 PVLEDIIVEK SCMNGGVHSC TTSDNEVQQE IEATSRNNNE DILCDDKLIN KPNLGPEDFS 1140 SGVSLGDEVQ QETNIRGGSQ VEPFFSSPTL TKGPSTVVVG NRSDVPREPC TAADLCDVAI 1200 SKDKAKKQEI QINANKERLL CGSITPVVID QRTSLSVEEY SVISKNPCAE ELHTGVTSDV 1260 EVLQEIQATK GTSGDEVIYC YHLPIKEKQP TPTVMEGCSE VQRECSSEKK SCADATAADD 1320 RHENDMIRNE KVGEESVSCC VTPINQGTPV PIQKYSRTRR ESRATVNVNN GGEVCSFVEN 1380 RDLESVAVNC RSSATDGRKR KREVVETPEK VGGSGFIRSP CEGLRPRARK DASSSFDAGK 1440 TSQEVLPTKE TRKPSVHTQS KKIIKKGSHR CDLEGCNMSF ETKEELRLHK RNRCPYEGCG 1500 KRFRSHKYAI LHQRVHEDDR PLKCPWKGCS MTFKWAWART EHIRVHTGER PYKCKVVGCG 1560 LSFRFVSDFS RHRRKTGHYV DSSA

Sequence ? help Back to Top

Protein Sequence Length: 1584 aa Download sequence

MGNVEIPNWL KGLPLAPEFR PTDTEFADPI AYISKIEKEA GAYGICKIIP PLPKPSKKYV  60
FNNLNRSLSK SPELGSDMDV SKNVGSISSC RDSGGEEGEG EGRAVFTTRH QELGQSGKKM  120
KAAVSSLQCG VHKQVWQSGE IYTLEQFESK SKTFAKSLLS VLKEVSPLHI EALFWKVASE  180
KPIYVEYAND VPGSGFGEPE GQFRYFHRRR RRRRKRMSYR RENADCKKDE MNTVHNSRID  240
EIKDTCVKSD QNTCFETPKI SPTSSTMASD DNSHSKRKSG DASNDMEGTA GWKLSNSPWN  300
LQVIARSAGS LTRFMPDDIP GVTSPMVYIG MLFSWFAWHV EDHELHSMNF LHTGSSKTWY  360
AVPGDYAYAF EEVIRTEAYG GNIDRLAALS LLGEKTTLLS PELIVASGIP CCRLIQNPGE  420
FVVTFPRAYH VGFSHGFNCG EAANFGTPQW LQVAKEAAVR RAAMNYLPML SHQQLLYLLT  480
MSFVSRVPRS LLPGARSSRL RDRQKEEREL LVKKAFIEDM LTENKLLSLL LKRGSTYRAI  540
IWDPDLLPYA SKDSELPSET AAVSTIPQEN VADIHSKNNT NQNNLLDEMS LYMENLNYLY  600
LNEDDLSCDF QVDSGTLACV ACGILGYPFM SVVQPSEGTL ELLPADHLSV QGPAVLESKN  660
THSCPDLDHP VEGSVSDNVH LVADQSQPPK DATSPSITKF CQGWDTSNIH LRPRIFCLEH  720
AVQVEEILQS KGGAKMLVIC HSDYQKIKAH AIPVAEDIGI TFNYNDVALD AASQEDLNLI  780
NLAIDDEHDE IGEDWTSKLG VNLRYCVKVR KNSPFKQVQH ALPLGGLFSD KYGSPELFNI  840
KWQSRKSRSK GKLNHPSSKP CESIELKVDE LLVEKLDGNI PKTELKIIQY SRRKKRKPDY  900
STGAGGCLEL VKDDLPREDS AATCELPDEH GGSKSKINAE SDSSVLFSSP STRASQTQPE  960
IQTSSVVGVV QKDHGKILQE SNLNGEGCSL AACASSQKHC EIKLMERTTE NNELSLADKC  1020
SKSSVIAACE RYKESTGAIC EVCNPVYEGQ CEELAARHDL INLANSANSL SAQPSAGRFD  1080
PVLEDIIVEK SCMNGGVHSC TTSDNEVQQE IEATSRNNNE DILCDDKLIN KPNLGPEDFS  1140
SGVSLGDEVQ QETNIRGGSQ VEPFFSSPTL TKGPSTVVVG NRSDVPREPC TAADLCDVAI  1200
SKDKAKKQEI QINANKERLL CGSITPVVID QRTSLSVEEY SVISKNPCAE ELHTGVTSDV  1260
EVLQEIQATK GTSGDEVIYC YHLPIKEKQP TPTVMEGCSE VQRECSSEKK SCADATAADD  1320
RHENDMIRNE KVGEESVSCC VTPINQGTPV PIQKYSRTRR ESRATVNVNN GGEVCSFVEN  1380
RDLESVAVNC RSSATDGRKR KREVVETPEK VGGSGFIRSP CEGLRPRARK DASSSFDAGK  1440
TSQEVLPTKE TRKPSVHTQS KKIIKKGSHR CDLEGCNMSF ETKEELRLHK RNRCPYEGCG  1500
KRFRSHKYAI LHQRVHEDDR PLKCPWKGCS MTFKWAWART EHIRVHTGER PYKCKVVGCG  1560
LSFRFVSDFS RHRRKTGHYV DSSA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	204	213	RYFHRRRRRR
2	204	214	RYFHRRRRRRR
3	208	213	RRRRRR
4	208	214	RRRRRRR
5	208	216	RRRRRRRKR
6	209	214	RRRRRR
7	209	216	RRRRRRKR
8	209	215	RRRRRRR
9	209	217	RRRRRRRKR
10	210	216	RRRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein