PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021295182.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family ARF
Protein Properties Length: 899aa    MW: 99282.7 Da    PI: 6.4038
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021295182.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.6e-24127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_021295182.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 217
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_021295182.1 218 KNQLLLGIRRA 228
                     9999****997 PP
2Auxin_resp119.62.4e-39253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  XP_021295182.1 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 336
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 899 aa     Download sequence    
MRLASAGFNP QTQEGEKRVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSLQEQKEA YLPAELGTPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYIKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPARWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
SFPMYPSPFP LRLKRPWPPG LPSFHGIKDD DLGMNSPLMW LRGDADRGMQ SLNLQGIGVT  420
PWMQPRLDAS MVGLPADMYQ AMAAAALQDL RVVDPSKPAT ASLLQFQQTQ NLPRRPAALM  480
QPQMLQQSQP QAFLQGVEDN QHQSQSQAQT PPHLLQQQLQ HQNSFNSQQQ PQHPLSQQHQ  540
QLVDHQQIHC AVSAMSQYAS ASQSQSSSLQ AMPSLCQQQS FSDSNGNTVT SPIVSPLHSL  600
LGSFPQDESS NLLNLPRSNP VITSAAWPSK RAAVEVLSSG SPQCVLPQVE QLGQTQTNMP  660
QNSISLPPFP GRECSIDQEG GTDPQSHLLF GVNIEPSSLL IQNGMSSLRG VGSDSDSTTI  720
PFSSNYMSAA GTDFSVNPAM TPSSCIDESG FLQSPENVGQ GNPQTRTFVK VYKSGSFGRS  780
LDISKFSSYN ELRSELAQMF GLEGQLEDPL RSGWQLVFVD RENDVLLLGD DPWPEFVNSV  840
WCIKILSPQE VQQMGKRGLE LLNSVPVQRL SNGSCDDYVS RQDSRNLSSG IASVGSLDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein