PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021295041.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family NF-YA
Protein Properties Length: 346aa    MW: 37970.2 Da    PI: 8.2748
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021295041.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.77e-32187243158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     dep+YVNaKQy++Il+RRq Rakle+++kl +k rkpylheSRh hAl+R+Rg+gGrF
  XP_021295041.1 187 DEPIYVNAKQYRAILRRRQFRAKLEAQNKL-IKVRKPYLHESRHLHALKRARGNGGRF 243
                     79****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    
MQNLHKKDSG VSSHSMCTYV LGCSSWGNST ETHVQQSSVS ERLSLKMGVL PQQFHNTKQL  60
SFQFQDQDSS STQSTGQSYP EVASAGDSNI YGQSLISASS GGNETHGNLF GGHAKLASSL  120
GTQDCFFPPS RVDHNKSTAH IPLHYAEPYF GGAVAAAYGL QAVQIHHHHM MAMLPARVPL  180
PLDLTEDEPI YVNAKQYRAI LRRRQFRAKL EAQNKLIKVR KPYLHESRHL HALKRARGNG  240
GRFLNKTKFQ ESEHIPSSHG LDMSRSTQLD LSAKISESEV HQVENYKDAT STTSCSEVTS  300
ASNSDEMFQQ PDFRFSGYPS HNGGALQGHG GNMHGGGNLH HLSGLC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.15e-73NF-YA family protein