PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021294968.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

WOX

Protein Properties

Length: 380aa MW: 41778.8 Da PI: 9.1287

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021294968.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.9	7.5e-18	53	113	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ XP_021294968.1 53 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKH 113 89***************99***********************************995 PP
2	Wus_type_Homeobox	112.2	2.7e-36	52	114	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++k XP_021294968.1 52 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 114 689**********************************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MASSNRHWPS MFKSKPCNTH HQWQPDINPS LMSSGCHRAP YSSGCEERSP EPKPRWNPKP 60 EQIRILEAIF NSGMVNPPRD EIRKIRAQLQ EYGQVGDANV FYWFQNRKSR SKHKLRNLQN 120 SKQQSQQNQQ TQQTRPMTNI TTITAPSSSS SSSEKSSPKG ANKSTLSMSS PNVIDVSNSP 180 TASVNQAYFH QPQNEFLNEP FFFPVQQAAA GNGFTQGFGF FELNNMVQVP EQPVGPCTSL 240 LLSEILHNGA SKKAHEEKMK MQLQLNYTGF TAPSTHTISP LTASTTATIT VPSNINHVQG 300 VGELGVVGPG GAARSTVFIN DVAFEVAAGP FNVREAFGDD AVLIQSSGQP VLTSEWGVTL 360 QPLQHGGFYY LVRSSIPFAV

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MASSNRHWPS MFKSKPCNTH HQWQPDINPS LMSSGCHRAP YSSGCEERSP EPKPRWNPKP  60
EQIRILEAIF NSGMVNPPRD EIRKIRAQLQ EYGQVGDANV FYWFQNRKSR SKHKLRNLQN  120
SKQQSQQNQQ TQQTRPMTNI TTITAPSSSS SSSEKSSPKG ANKSTLSMSS PNVIDVSNSP  180
TASVNQAYFH QPQNEFLNEP FFFPVQQAAA GNGFTQGFGF FELNNMVQVP EQPVGPCTSL  240
LLSEILHNGA SKKAHEEKMK MQLQLNYTGF TAPSTHTISP LTASTTATIT VPSNINHVQG  300
VGELGVVGPG GAARSTVFIN DVAFEVAAGP FNVREAFGDD AVLIQSSGQP VLTSEWGVTL  360
QPLQHGGFYY LVRSSIPFAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	5e-94	WOX family protein