PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021294850.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family LBD
Protein Properties Length: 244aa    MW: 28105.2 Da    PI: 6.8869
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021294850.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.43.7e-41141131100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l + e+++am+++v++++ara+dPv G++++i++lq+q+e ++ael+
  XP_021294850.1  14 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLTPPEKDIAMRTIVFQSDARANDPVGGCYRIIQELQRQIEYSQAELD 108
                     7*********************************************************************************************9 PP

          DUF260  96 llkee 100
                     l+ ++
  XP_021294850.1 109 LVFHQ 113
                     98776 PP

Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MSIPRTGSNG TTQACAACKY QRRKCAPDCI LAPYFPHDRQ RQFLNAHKLF GVSNITKIIK  60
NLTPPEKDIA MRTIVFQSDA RANDPVGGCY RIIQELQRQI EYSQAELDLV FHQLAICRAQ  120
AHQQRQQSHL QMHEPGDSSL GCQMVNTDPL NSYNSNYYYV EEPHEQQFSV NNNHHHLQEN  180
YGSWGIQEST TLDSLNVKQS FIRVCDNEAK PDLEXSCERH KVRFETEELV ERRFVPSTQL  240
VMSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.13e-70LBD family protein